miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32797 5' -48.7 NC_007346.1 + 188108 0.66 0.999996
Target:  5'- gGCGGCGgugggGACggUG-GAGGAGgUGAg -3'
miRNA:   3'- gCGCUGCa----CUGaaACgCUUUUCgACU- -5'
32797 5' -48.7 NC_007346.1 + 238583 0.66 0.999995
Target:  5'- gCGCGAUGUaaaaGuCgUUUGCGAugucAAGCUGGg -3'
miRNA:   3'- -GCGCUGCA----CuG-AAACGCUu---UUCGACU- -5'
32797 5' -48.7 NC_007346.1 + 188042 0.66 0.99999
Target:  5'- gGCGGCGUGggcgGCggUGgGGAGGGCg-- -3'
miRNA:   3'- gCGCUGCAC----UGaaACgCUUUUCGacu -5'
32797 5' -48.7 NC_007346.1 + 338429 0.67 0.999976
Target:  5'- aGCuGGuCGUGGCUgucUUGCGGGAccaguuguGGCUGGu -3'
miRNA:   3'- gCG-CU-GCACUGA---AACGCUUU--------UCGACU- -5'
32797 5' -48.7 NC_007346.1 + 392080 0.67 0.999958
Target:  5'- gGCGAC-UGGCUcgGCGAcuGGCUc- -3'
miRNA:   3'- gCGCUGcACUGAaaCGCUuuUCGAcu -5'
32797 5' -48.7 NC_007346.1 + 188075 0.68 0.999928
Target:  5'- gGCGGCGUgGGCggcgGCGgAGGAGgUGAg -3'
miRNA:   3'- gCGCUGCA-CUGaaa-CGC-UUUUCgACU- -5'
32797 5' -48.7 NC_007346.1 + 198852 0.68 0.999928
Target:  5'- gGCGGCGaUGGCg--GCGggGuGGUUGGu -3'
miRNA:   3'- gCGCUGC-ACUGaaaCGCuuU-UCGACU- -5'
32797 5' -48.7 NC_007346.1 + 262616 0.69 0.999805
Target:  5'- aGgGAacugGUGGCgagUUGCGGAGuuGGCUGAu -3'
miRNA:   3'- gCgCUg---CACUGa--AACGCUUU--UCGACU- -5'
32797 5' -48.7 NC_007346.1 + 256758 0.69 0.999805
Target:  5'- aGgGAacugGUGGCgagUUGCGGAGuuGGCUGAu -3'
miRNA:   3'- gCgCUg---CACUGa--AACGCUUU--UCGACU- -5'
32797 5' -48.7 NC_007346.1 + 272616 0.7 0.999416
Target:  5'- gGCGACGUGugUUucgGCGAcgacgguGGaCUGAu -3'
miRNA:   3'- gCGCUGCACugAAa--CGCUuu-----UC-GACU- -5'
32797 5' -48.7 NC_007346.1 + 255443 0.73 0.993714
Target:  5'- aGCGAU-UGGCcuugGCGAAAAGCUGGc -3'
miRNA:   3'- gCGCUGcACUGaaa-CGCUUUUCGACU- -5'
32797 5' -48.7 NC_007346.1 + 87338 0.73 0.990614
Target:  5'- gCGCGGCGUccauaGACcccgUUGCaAGGAGCUGAg -3'
miRNA:   3'- -GCGCUGCA-----CUGa---AACGcUUUUCGACU- -5'
32797 5' -48.7 NC_007346.1 + 309747 0.74 0.987955
Target:  5'- gGUGGCGgugGACUUgguggcgGCGAcgGGCUGGg -3'
miRNA:   3'- gCGCUGCa--CUGAAa------CGCUuuUCGACU- -5'
32797 5' -48.7 NC_007346.1 + 307182 0.74 0.987955
Target:  5'- gGUGGCGgugGACUUggcggcgGCGAcgGGCUGGg -3'
miRNA:   3'- gCGCUGCa--CUGAAa------CGCUuuUCGACU- -5'
32797 5' -48.7 NC_007346.1 + 270193 1.1 0.031906
Target:  5'- uCGCGACGUGACUUUGCGAAAAGCUGAg -3'
miRNA:   3'- -GCGCUGCACUGAAACGCUUUUCGACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.