miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32798 3' -54.2 NC_007346.1 + 192173 0.66 0.998543
Target:  5'- gUGAAACaACACGUcucCGUCACCUGuCGu -3'
miRNA:   3'- gGCUUUG-UGUGCA---GCGGUGGGCuGCu -5'
32798 3' -54.2 NC_007346.1 + 251765 0.66 0.998279
Target:  5'- -aGAAACACACucuacaaCGCCGCCgaauuUGACGGa -3'
miRNA:   3'- ggCUUUGUGUGca-----GCGGUGG-----GCUGCU- -5'
32798 3' -54.2 NC_007346.1 + 292062 0.66 0.998279
Target:  5'- aUGAGAUGgACGUUGCCcaaCGACGAu -3'
miRNA:   3'- gGCUUUGUgUGCAGCGGuggGCUGCU- -5'
32798 3' -54.2 NC_007346.1 + 304523 0.66 0.99825
Target:  5'- aCCGAAACACAgCGcccgcugguuuaaUCGCCAUguaGAUGAc -3'
miRNA:   3'- -GGCUUUGUGU-GC-------------AGCGGUGgg-CUGCU- -5'
32798 3' -54.2 NC_007346.1 + 231073 0.66 0.997975
Target:  5'- cCCG-AACAa--GUUGCCA-CCGACGGa -3'
miRNA:   3'- -GGCuUUGUgugCAGCGGUgGGCUGCU- -5'
32798 3' -54.2 NC_007346.1 + 126212 0.66 0.997627
Target:  5'- gCCGAAAauccagcaaACAgGUCGCCGCCacAUGAa -3'
miRNA:   3'- -GGCUUUg--------UGUgCAGCGGUGGgcUGCU- -5'
32798 3' -54.2 NC_007346.1 + 250411 0.66 0.997627
Target:  5'- -aGAAACAUAU-UCGCCACC-GACGc -3'
miRNA:   3'- ggCUUUGUGUGcAGCGGUGGgCUGCu -5'
32798 3' -54.2 NC_007346.1 + 203039 0.67 0.996782
Target:  5'- aUGAAAUGCACGUaaUGCCAUgUGACa- -3'
miRNA:   3'- gGCUUUGUGUGCA--GCGGUGgGCUGcu -5'
32798 3' -54.2 NC_007346.1 + 372550 0.67 0.996273
Target:  5'- aCGAGAUGCaccuaGCGUCGCCAUgguaguuaGACGAg -3'
miRNA:   3'- gGCUUUGUG-----UGCAGCGGUGgg------CUGCU- -5'
32798 3' -54.2 NC_007346.1 + 260710 0.67 0.996273
Target:  5'- cUCG-GACGCGCGUCGCCcaACUCGcCa- -3'
miRNA:   3'- -GGCuUUGUGUGCAGCGG--UGGGCuGcu -5'
32798 3' -54.2 NC_007346.1 + 54372 0.67 0.995701
Target:  5'- uUGAGGCGCGCGUUGCaCGCaCgGGCc- -3'
miRNA:   3'- gGCUUUGUGUGCAGCG-GUG-GgCUGcu -5'
32798 3' -54.2 NC_007346.1 + 275448 0.67 0.995516
Target:  5'- aCCGAAcucuugaugaugucACGCACGUCaGCCGCCguguacaccucUGACu- -3'
miRNA:   3'- -GGCUU--------------UGUGUGCAG-CGGUGG-----------GCUGcu -5'
32798 3' -54.2 NC_007346.1 + 160523 0.67 0.995059
Target:  5'- aCCGGuuguuGCACcgguUGUUGCaCAUCCGAUGAu -3'
miRNA:   3'- -GGCUu----UGUGu---GCAGCG-GUGGGCUGCU- -5'
32798 3' -54.2 NC_007346.1 + 238700 0.68 0.993872
Target:  5'- aCCGucgccagucgcagauGAGCGC-CGUCGCCAgucaCCGACa- -3'
miRNA:   3'- -GGC---------------UUUGUGuGCAGCGGUg---GGCUGcu -5'
32798 3' -54.2 NC_007346.1 + 340727 0.68 0.993542
Target:  5'- -aGAAACAUAUGUgG-UGCCCGAUGAu -3'
miRNA:   3'- ggCUUUGUGUGCAgCgGUGGGCUGCU- -5'
32798 3' -54.2 NC_007346.1 + 216243 0.68 0.993457
Target:  5'- uCCGAuguauGCACACGaUUacaguggGCCACUCGAgGAc -3'
miRNA:   3'- -GGCUu----UGUGUGC-AG-------CGGUGGGCUgCU- -5'
32798 3' -54.2 NC_007346.1 + 251379 0.68 0.992654
Target:  5'- uCCGAcACGCugGauUCGUucauuaacaaugCGCCUGACGAc -3'
miRNA:   3'- -GGCUuUGUGugC--AGCG------------GUGGGCUGCU- -5'
32798 3' -54.2 NC_007346.1 + 284699 0.68 0.991672
Target:  5'- aCUGGAcgcgcCACugGacgCGCCACUgGACGAa -3'
miRNA:   3'- -GGCUUu----GUGugCa--GCGGUGGgCUGCU- -5'
32798 3' -54.2 NC_007346.1 + 45624 0.68 0.989397
Target:  5'- gUGAAAU-CAUGUCGCCAacaCCGGCa- -3'
miRNA:   3'- gGCUUUGuGUGCAGCGGUg--GGCUGcu -5'
32798 3' -54.2 NC_007346.1 + 263658 0.68 0.989397
Target:  5'- gCGGGguacauGCGCACgGUCGCUACCauauGACGGu -3'
miRNA:   3'- gGCUU------UGUGUG-CAGCGGUGGg---CUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.