miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32800 5' -55.7 NC_007346.1 + 238901 0.66 0.993328
Target:  5'- --aCCcAGUUCGAgGACU-CGAUCACCg -3'
miRNA:   3'- cuaGGcUCGAGCU-CUGAcGCUGGUGG- -5'
32800 5' -55.7 NC_007346.1 + 51017 0.66 0.987706
Target:  5'- -uUCCaAGCUCGAGAaggGCuGCuCGCCa -3'
miRNA:   3'- cuAGGcUCGAGCUCUga-CGcUG-GUGG- -5'
32800 5' -55.7 NC_007346.1 + 239092 0.66 0.987706
Target:  5'- -uUCCGAGCaccuggccacCGAGuuUGaugaGACCACCa -3'
miRNA:   3'- cuAGGCUCGa---------GCUCugACg---CUGGUGG- -5'
32800 5' -55.7 NC_007346.1 + 266741 0.67 0.984633
Target:  5'- cGAUCuCGAGCgcauGACguaacGCGAUCGCCu -3'
miRNA:   3'- -CUAG-GCUCGagcuCUGa----CGCUGGUGG- -5'
32800 5' -55.7 NC_007346.1 + 234809 0.67 0.982893
Target:  5'- cAUCCGAGUgauuaccauuUCGAaacccaACUGCGAUUACCc -3'
miRNA:   3'- cUAGGCUCG----------AGCUc-----UGACGCUGGUGG- -5'
32800 5' -55.7 NC_007346.1 + 256270 0.67 0.982893
Target:  5'- cGAUCuCGAGgaCGAGAUUGacgaGACacaGCCc -3'
miRNA:   3'- -CUAG-GCUCgaGCUCUGACg---CUGg--UGG- -5'
32800 5' -55.7 NC_007346.1 + 274757 0.68 0.974425
Target:  5'- -uUCCGAGCUCcAGcaucaGC-GCGACgACCa -3'
miRNA:   3'- cuAGGCUCGAGcUC-----UGaCGCUGgUGG- -5'
32800 5' -55.7 NC_007346.1 + 165135 0.69 0.952907
Target:  5'- --aCCGAGCgCGAGAUugcagugGCGACUcaACCa -3'
miRNA:   3'- cuaGGCUCGaGCUCUGa------CGCUGG--UGG- -5'
32800 5' -55.7 NC_007346.1 + 239772 0.7 0.9363
Target:  5'- cGGUuuGAGCaccgcgcgCGGGAUUgaaauccggcacGCGACCGCCg -3'
miRNA:   3'- -CUAggCUCGa-------GCUCUGA------------CGCUGGUGG- -5'
32800 5' -55.7 NC_007346.1 + 253907 0.7 0.931632
Target:  5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3'
miRNA:   3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5'
32800 5' -55.7 NC_007346.1 + 255018 0.7 0.931632
Target:  5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3'
miRNA:   3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5'
32800 5' -55.7 NC_007346.1 + 255939 0.7 0.931632
Target:  5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3'
miRNA:   3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5'
32800 5' -55.7 NC_007346.1 + 253174 0.7 0.931632
Target:  5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3'
miRNA:   3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5'
32800 5' -55.7 NC_007346.1 + 252404 0.7 0.931632
Target:  5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3'
miRNA:   3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5'
32800 5' -55.7 NC_007346.1 + 249084 0.7 0.931632
Target:  5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3'
miRNA:   3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5'
32800 5' -55.7 NC_007346.1 + 243427 0.7 0.931632
Target:  5'- cGUCCGAGCguggcucgaGAGAUUGUGAUCucCCa -3'
miRNA:   3'- cUAGGCUCGag-------CUCUGACGCUGGu-GG- -5'
32800 5' -55.7 NC_007346.1 + 258138 0.71 0.910868
Target:  5'- cGUCCGAGCguggcucgCGAGAUUGUGAUC-UCg -3'
miRNA:   3'- cUAGGCUCGa-------GCUCUGACGCUGGuGG- -5'
32800 5' -55.7 NC_007346.1 + 256795 0.71 0.910868
Target:  5'- --aCCGAGCgugggucgCGAGAUUGUGACC-UCg -3'
miRNA:   3'- cuaGGCUCGa-------GCUCUGACGCUGGuGG- -5'
32800 5' -55.7 NC_007346.1 + 257533 0.71 0.910868
Target:  5'- --aCCGAGCgugggucgCGAGAUUGUGACC-UCg -3'
miRNA:   3'- cuaGGCUCGa-------GCUCUGACGCUGGuGG- -5'
32800 5' -55.7 NC_007346.1 + 259973 0.71 0.880291
Target:  5'- --aCCGAGCgugggucgCGAGAUUGUGAUCuCCa -3'
miRNA:   3'- cuaGGCUCGa-------GCUCUGACGCUGGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.