miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32801 3' -52.8 NC_007346.1 + 44141 0.66 0.998793
Target:  5'- cAGCGGCGCGcgcugcugCGAugcauGCGCGAGUc-- -3'
miRNA:   3'- cUUGCCGCGUa-------GCUu----CGCGUUCGaac -5'
32801 3' -52.8 NC_007346.1 + 238243 0.66 0.998556
Target:  5'- aAGCGGCGUGUCGGugacuGGCGaCGgcGGCUc- -3'
miRNA:   3'- cUUGCCGCGUAGCU-----UCGC-GU--UCGAac -5'
32801 3' -52.8 NC_007346.1 + 214875 0.68 0.99321
Target:  5'- --cCGGUGCuUCGAGGCGUuuGCa-- -3'
miRNA:   3'- cuuGCCGCGuAGCUUCGCGuuCGaac -5'
32801 3' -52.8 NC_007346.1 + 215172 0.68 0.99321
Target:  5'- --cCGGUGCuUCGAGGCGUuuGCa-- -3'
miRNA:   3'- cuuGCCGCGuAGCUUCGCGuuCGaac -5'
32801 3' -52.8 NC_007346.1 + 306049 0.68 0.99321
Target:  5'- gGAACGGCGUgcacGUCcgGGAGUGCAcGCUc- -3'
miRNA:   3'- -CUUGCCGCG----UAG--CUUCGCGUuCGAac -5'
32801 3' -52.8 NC_007346.1 + 214381 0.68 0.99321
Target:  5'- --cCGGUGCuUCGAGGCGUuuGCa-- -3'
miRNA:   3'- cuuGCCGCGuAGCUUCGCGuuCGaac -5'
32801 3' -52.8 NC_007346.1 + 274029 0.68 0.988677
Target:  5'- -cGCGGUGCucgCGAAGUGCA-GCa-- -3'
miRNA:   3'- cuUGCCGCGua-GCUUCGCGUuCGaac -5'
32801 3' -52.8 NC_007346.1 + 246712 0.69 0.985668
Target:  5'- cAGCGGUGCGagCGAuuGUGCAAGCa-- -3'
miRNA:   3'- cUUGCCGCGUa-GCUu-CGCGUUCGaac -5'
32801 3' -52.8 NC_007346.1 + 311403 0.69 0.982083
Target:  5'- uGGCGGCGgAggCGAGG-GUGAGCUUGa -3'
miRNA:   3'- cUUGCCGCgUa-GCUUCgCGUUCGAAC- -5'
32801 3' -52.8 NC_007346.1 + 262411 0.7 0.974751
Target:  5'- -cACGGCGUAcuuuguggucaguuUCGucGCGCGAGCg-- -3'
miRNA:   3'- cuUGCCGCGU--------------AGCuuCGCGUUCGaac -5'
32801 3' -52.8 NC_007346.1 + 310720 0.71 0.960848
Target:  5'- gGggUGGCGCAggCGGuguGgGUggGCUUGg -3'
miRNA:   3'- -CuuGCCGCGUa-GCUu--CgCGuuCGAAC- -5'
32801 3' -52.8 NC_007346.1 + 274938 1.09 0.014106
Target:  5'- uGAACGGCGCAUCGAAGCGCAAGCUUGa -3'
miRNA:   3'- -CUUGCCGCGUAGCUUCGCGUUCGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.