miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32801 5' -49.8 NC_007346.1 + 56382 0.66 0.999979
Target:  5'- uUCAUGaauguugggaauGCCGCa--UG-GggUGCACCa -3'
miRNA:   3'- cAGUAC------------UGGCGguaACuCuuACGUGG- -5'
32801 5' -49.8 NC_007346.1 + 249200 0.66 0.999972
Target:  5'- cUCAUGuCCGUCGUgaguugGAGGAUGuUACg -3'
miRNA:   3'- cAGUACuGGCGGUAa-----CUCUUAC-GUGg -5'
32801 5' -49.8 NC_007346.1 + 159255 0.66 0.999962
Target:  5'- --aAUGACUGUCGUUG-GAAUuGCugCu -3'
miRNA:   3'- cagUACUGGCGGUAACuCUUA-CGugG- -5'
32801 5' -49.8 NC_007346.1 + 98673 0.66 0.99995
Target:  5'- -aCGUGGCCcaccgcGUCGggauugGAGAAUGCACg -3'
miRNA:   3'- caGUACUGG------CGGUaa----CUCUUACGUGg -5'
32801 5' -49.8 NC_007346.1 + 19500 0.67 0.999916
Target:  5'- -aCGUGAUUGCagcgcguuuuuUAUUGaAGAAUGCACUg -3'
miRNA:   3'- caGUACUGGCG-----------GUAAC-UCUUACGUGG- -5'
32801 5' -49.8 NC_007346.1 + 66439 0.67 0.999889
Target:  5'- uUCuuugGACCGCCAUguucaugGuGAAuaauguccgaaauUGCACCg -3'
miRNA:   3'- cAGua--CUGGCGGUAa------CuCUU-------------ACGUGG- -5'
32801 5' -49.8 NC_007346.1 + 365083 0.67 0.999777
Target:  5'- ----cGGCCGCCAUaucaaUGAGAGUucGCAUg -3'
miRNA:   3'- caguaCUGGCGGUA-----ACUCUUA--CGUGg -5'
32801 5' -49.8 NC_007346.1 + 135137 0.68 0.999567
Target:  5'- gGUCuUGACCGCCggUGGcGGUGgAUCg -3'
miRNA:   3'- -CAGuACUGGCGGuaACUcUUACgUGG- -5'
32801 5' -49.8 NC_007346.1 + 138951 0.68 0.999567
Target:  5'- -aUAUGAUaCGCCA---GGAAUGUACCg -3'
miRNA:   3'- caGUACUG-GCGGUaacUCUUACGUGG- -5'
32801 5' -49.8 NC_007346.1 + 309626 0.68 0.999567
Target:  5'- -aCAUG-CCGUag--GAGAAUGCGCUu -3'
miRNA:   3'- caGUACuGGCGguaaCUCUUACGUGG- -5'
32801 5' -49.8 NC_007346.1 + 50664 0.69 0.998441
Target:  5'- --aAUGAaugUCGCCAUcauaagcgcgguaauUGGGAAUGUACCa -3'
miRNA:   3'- cagUACU---GGCGGUA---------------ACUCUUACGUGG- -5'
32801 5' -49.8 NC_007346.1 + 313538 0.71 0.992257
Target:  5'- aUUAUGACCGCauguaugGAGGcgGUACCc -3'
miRNA:   3'- cAGUACUGGCGguaa---CUCUuaCGUGG- -5'
32801 5' -49.8 NC_007346.1 + 274904 1.14 0.014107
Target:  5'- cGUCAUGACCGCCAUUGAGAAUGCACCg -3'
miRNA:   3'- -CAGUACUGGCGGUAACUCUUACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.