miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32802 5' -56.1 NC_007346.1 + 137417 0.66 0.983392
Target:  5'- aUGGGCcgC-CACUCGCGgCAUGGCu-- -3'
miRNA:   3'- -ACUCGuaGaGUGAGCGC-GUGUCGcgu -5'
32802 5' -56.1 NC_007346.1 + 275675 0.66 0.982846
Target:  5'- -cGGCGUCUCAC-CGUGUuucaccaaauccagACGGCGUc -3'
miRNA:   3'- acUCGUAGAGUGaGCGCG--------------UGUCGCGu -5'
32802 5' -56.1 NC_007346.1 + 239846 0.66 0.982286
Target:  5'- --uGCAUCUCGCuuggucuuguacaugUCGCGgACGGUGUc -3'
miRNA:   3'- acuCGUAGAGUG---------------AGCGCgUGUCGCGu -5'
32802 5' -56.1 NC_007346.1 + 85998 0.66 0.977298
Target:  5'- aGAGCucggagUUCGCgUCGUGCGCGGCa-- -3'
miRNA:   3'- aCUCGua----GAGUG-AGCGCGUGUCGcgu -5'
32802 5' -56.1 NC_007346.1 + 252708 0.67 0.972408
Target:  5'- cGcGCgGUCUC-CUCGCGauuuauCAGCGCAa -3'
miRNA:   3'- aCuCG-UAGAGuGAGCGCgu----GUCGCGU- -5'
32802 5' -56.1 NC_007346.1 + 230410 0.67 0.966801
Target:  5'- gUGGGUAUCggAUUUGCGCACAuacGgGCAg -3'
miRNA:   3'- -ACUCGUAGagUGAGCGCGUGU---CgCGU- -5'
32802 5' -56.1 NC_007346.1 + 138089 0.7 0.898732
Target:  5'- cUGGGCGU-UCACUCGgGCGgCGGCgGCGg -3'
miRNA:   3'- -ACUCGUAgAGUGAGCgCGU-GUCG-CGU- -5'
32802 5' -56.1 NC_007346.1 + 238123 0.72 0.819471
Target:  5'- -cAGCGUCUUACUgUGCGCGC-GCGUAg -3'
miRNA:   3'- acUCGUAGAGUGA-GCGCGUGuCGCGU- -5'
32802 5' -56.1 NC_007346.1 + 274044 0.72 0.794286
Target:  5'- gUGcAGCAUCggcgUugUCGCGCGCAGUaauuGCAu -3'
miRNA:   3'- -AC-UCGUAGa---GugAGCGCGUGUCG----CGU- -5'
32802 5' -56.1 NC_007346.1 + 86909 0.73 0.776823
Target:  5'- cGGGCAUCUCGgUCGacuGCAUcuGCGCAg -3'
miRNA:   3'- aCUCGUAGAGUgAGCg--CGUGu-CGCGU- -5'
32802 5' -56.1 NC_007346.1 + 233263 0.73 0.740555
Target:  5'- --cGCGUaccCUCACUCGCGC-CAGCuGCAa -3'
miRNA:   3'- acuCGUA---GAGUGAGCGCGuGUCG-CGU- -5'
32802 5' -56.1 NC_007346.1 + 275085 1.09 0.007144
Target:  5'- aUGAGCAUCUCACUCGCGCACAGCGCAu -3'
miRNA:   3'- -ACUCGUAGAGUGAGCGCGUGUCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.