miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32803 3' -59.4 NC_007346.1 + 243550 0.66 0.958645
Target:  5'- aGCGccguuGCGUCauugcacgcgCGCUCAAugUCGGCGGa -3'
miRNA:   3'- cCGC-----CGCAGa---------GUGGGUUugGGCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 258120 0.66 0.956627
Target:  5'- ---cGCGUCUCAuugccCCCGGGCCgagauagaaucccgaCGGCGGa -3'
miRNA:   3'- ccgcCGCAGAGU-----GGGUUUGG---------------GCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 57258 0.67 0.939771
Target:  5'- uGGCGGa-UgUUACCCA---CCGGCGGc -3'
miRNA:   3'- -CCGCCgcAgAGUGGGUuugGGCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 258726 0.67 0.937186
Target:  5'- ---cGCGUCUCAuugcuCCCGGACCgagauagaaucccgaCGGCGGa -3'
miRNA:   3'- ccgcCGCAGAGU-----GGGUUUGG---------------GCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 171923 0.67 0.932722
Target:  5'- cGGCGuacaguacgucugguGCGUCUgGuucUCCGAACaCGGCGGg -3'
miRNA:   3'- -CCGC---------------CGCAGAgU---GGGUUUGgGCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 238285 0.67 0.930883
Target:  5'- uGGCGaCGguggCUCACCUucGACCggcgaCGGCGGc -3'
miRNA:   3'- -CCGCcGCa---GAGUGGGu-UUGG-----GCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 221557 0.67 0.926147
Target:  5'- cGGCGGCac--CGCCCAuACCa-GCGGg -3'
miRNA:   3'- -CCGCCGcagaGUGGGUuUGGgcCGCC- -5'
32803 3' -59.4 NC_007346.1 + 86875 0.67 0.923212
Target:  5'- aGGCGGCcgagcgugaugcgCUCACCgCGAACgCUGGCa- -3'
miRNA:   3'- -CCGCCGca-----------GAGUGG-GUUUG-GGCCGcc -5'
32803 3' -59.4 NC_007346.1 + 128023 0.68 0.91609
Target:  5'- uGGCGGUGguggaCUCGgCgGuggugGACUCGGCGGc -3'
miRNA:   3'- -CCGCCGCa----GAGUgGgU-----UUGGGCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 225998 0.68 0.910771
Target:  5'- cGUGGCGUC-CugaCGAACCagaGGCGGa -3'
miRNA:   3'- cCGCCGCAGaGuggGUUUGGg--CCGCC- -5'
32803 3' -59.4 NC_007346.1 + 309730 0.68 0.893664
Target:  5'- uGGCGGCGaCggGCUgggaggcggCGGGCUCGGCGGc -3'
miRNA:   3'- -CCGCCGCaGagUGG---------GUUUGGGCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 53881 0.69 0.881323
Target:  5'- cGGC-GCGUCaUCugCCGAAaauaaCCGcGCGGu -3'
miRNA:   3'- -CCGcCGCAG-AGugGGUUUg----GGC-CGCC- -5'
32803 3' -59.4 NC_007346.1 + 307165 0.69 0.87488
Target:  5'- cGGCGGCGaCggGCUggggggcggCGGGCUCGGCGGc -3'
miRNA:   3'- -CCGCCGCaGagUGG---------GUUUGGGCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 208434 0.7 0.81734
Target:  5'- gGGCGGUGUUUCGUCaCGAAaggCGGCGGg -3'
miRNA:   3'- -CCGCCGCAGAGUGG-GUUUgg-GCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 86632 0.7 0.809472
Target:  5'- cGGC-GCGUgUCACacaGAAgCCGGCGGu -3'
miRNA:   3'- -CCGcCGCAgAGUGgg-UUUgGGCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 227915 0.73 0.688523
Target:  5'- ---nGCGUCUCAgUCAAuCCCGGCGGc -3'
miRNA:   3'- ccgcCGCAGAGUgGGUUuGGGCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 280443 0.73 0.642554
Target:  5'- cGCGGCaggGUCgCAUCCAccaauCCCGGCGGu -3'
miRNA:   3'- cCGCCG---CAGaGUGGGUuu---GGGCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 239548 0.75 0.568936
Target:  5'- cGGCGGCGgugaugguggUCUCA-UCAAACUCGGUGGc -3'
miRNA:   3'- -CCGCCGC----------AGAGUgGGUUUGGGCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 227955 0.81 0.276749
Target:  5'- -aCGGCGUCUCAgUCAAACUCGGUGGc -3'
miRNA:   3'- ccGCCGCAGAGUgGGUUUGGGCCGCC- -5'
32803 3' -59.4 NC_007346.1 + 275695 0.91 0.069272
Target:  5'- ---nGCGUCUCACCCAAACCCGGCGGc -3'
miRNA:   3'- ccgcCGCAGAGUGGGUUUGGGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.