Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32812 | 3' | -45.5 | NC_007346.1 | + | 116486 | 0.66 | 1 |
Target: 5'- ---aCAa-AAGAGUGCAagcgaugUACCGCAUCg -3' miRNA: 3'- agaaGUggUUCUUAUGU-------AUGGCGUAG- -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 146622 | 0.66 | 1 |
Target: 5'- --aUCACCAAGAGacuuuaaauccuUGCGaACCGUuUCa -3' miRNA: 3'- agaAGUGGUUCUU------------AUGUaUGGCGuAG- -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 191335 | 0.66 | 1 |
Target: 5'- aCUUCACCAGGAcgAUGgGUACa--AUCu -3' miRNA: 3'- aGAAGUGGUUCU--UAUgUAUGgcgUAG- -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 209531 | 0.66 | 1 |
Target: 5'- --aUCACCAAuggucuuccGGAUGUgAUACCGCAUCc -3' miRNA: 3'- agaAGUGGUU---------CUUAUG-UAUGGCGUAG- -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 42048 | 0.66 | 1 |
Target: 5'- aUCgUUCGCUu-GAAUACG-GCCGUAUCc -3' miRNA: 3'- -AG-AAGUGGuuCUUAUGUaUGGCGUAG- -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 95394 | 0.66 | 1 |
Target: 5'- -aUUCuACUAucAGGAUACAUugCaGCGUCa -3' miRNA: 3'- agAAG-UGGU--UCUUAUGUAugG-CGUAG- -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 216322 | 0.66 | 1 |
Target: 5'- gUCUgcagCGCCGAGuguguccUAUGUGCCGCGc- -3' miRNA: 3'- -AGAa---GUGGUUCuu-----AUGUAUGGCGUag -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 269467 | 0.66 | 1 |
Target: 5'- --gUUGCUAGGAAUACAaucgacgaaguaUAUCGCAUUa -3' miRNA: 3'- agaAGUGGUUCUUAUGU------------AUGGCGUAG- -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 331541 | 0.66 | 1 |
Target: 5'- cCUUCAUCGcAGAGUuCAU-CCGCAa- -3' miRNA: 3'- aGAAGUGGU-UCUUAuGUAuGGCGUag -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 238404 | 0.66 | 1 |
Target: 5'- gCUUgcCACCgAGGAGUACAUuaacgggcGCCGCGc- -3' miRNA: 3'- aGAA--GUGG-UUCUUAUGUA--------UGGCGUag -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 55002 | 0.66 | 1 |
Target: 5'- --aUCACCAAuaagacGAAUGCAUGCauacacuccgCGCAUUg -3' miRNA: 3'- agaAGUGGUU------CUUAUGUAUG----------GCGUAG- -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 80682 | 0.67 | 1 |
Target: 5'- uUCUgcgCGCCcAGAAUaACGUACCGauaAUUa -3' miRNA: 3'- -AGAa--GUGGuUCUUA-UGUAUGGCg--UAG- -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 212130 | 0.67 | 1 |
Target: 5'- gCUUggUGCCAGGAGUACGUGCCu---- -3' miRNA: 3'- aGAA--GUGGUUCUUAUGUAUGGcguag -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 248807 | 0.67 | 1 |
Target: 5'- ---aCACCG-----ACGUGCCGCAUCc -3' miRNA: 3'- agaaGUGGUucuuaUGUAUGGCGUAG- -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 273565 | 0.67 | 1 |
Target: 5'- --cUCACCGAGAAUGaAUggaguaaauguaAUCGCAUCc -3' miRNA: 3'- agaAGUGGUUCUUAUgUA------------UGGCGUAG- -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 287215 | 0.67 | 1 |
Target: 5'- gCUUCACCAAaaaguCAgACCGCAUg -3' miRNA: 3'- aGAAGUGGUUcuuauGUaUGGCGUAg -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 216879 | 0.67 | 1 |
Target: 5'- uUCUacgCACCGAGuuuUGCAaACCcaaGCAUCa -3' miRNA: 3'- -AGAa--GUGGUUCuu-AUGUaUGG---CGUAG- -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 237305 | 0.67 | 1 |
Target: 5'- ---cCGCCaAAGAAcGCGUGCCGUAa- -3' miRNA: 3'- agaaGUGG-UUCUUaUGUAUGGCGUag -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 186955 | 0.67 | 1 |
Target: 5'- ---cCACCuGGAAUGCGUAacCCGCGc- -3' miRNA: 3'- agaaGUGGuUCUUAUGUAU--GGCGUag -5' |
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32812 | 3' | -45.5 | NC_007346.1 | + | 264103 | 0.67 | 1 |
Target: 5'- --aUCACCGAGAcgcCGUcuAUCGCGUCu -3' miRNA: 3'- agaAGUGGUUCUuauGUA--UGGCGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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