miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32812 3' -45.5 NC_007346.1 + 201804 0.7 0.999988
Target:  5'- -aUUCACUu--GAUGCAUGCCGUAUUu -3'
miRNA:   3'- agAAGUGGuucUUAUGUAUGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 332316 0.78 0.980932
Target:  5'- aUCUaUACCAGGA--GCAUGCCGCAcUCg -3'
miRNA:   3'- -AGAaGUGGUUCUuaUGUAUGGCGU-AG- -5'
32812 3' -45.5 NC_007346.1 + 6362 1.13 0.042612
Target:  5'- gUCUUCACCAAGAAUACAUACCGCAUCa -3'
miRNA:   3'- -AGAAGUGGUUCUUAUGUAUGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 212130 0.67 1
Target:  5'- gCUUggUGCCAGGAGUACGUGCCu---- -3'
miRNA:   3'- aGAA--GUGGUUCUUAUGUAUGGcguag -5'
32812 3' -45.5 NC_007346.1 + 196920 0.68 1
Target:  5'- aCUUCACCAA--AUAUAguuguauCUGCAUCa -3'
miRNA:   3'- aGAAGUGGUUcuUAUGUau-----GGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 41870 0.69 0.999998
Target:  5'- cCUUCGCaaauuCGAGAAUGCGUugCuucugcGCGUCg -3'
miRNA:   3'- aGAAGUG-----GUUCUUAUGUAugG------CGUAG- -5'
32812 3' -45.5 NC_007346.1 + 146622 0.66 1
Target:  5'- --aUCACCAAGAGacuuuaaauccuUGCGaACCGUuUCa -3'
miRNA:   3'- agaAGUGGUUCUU------------AUGUaUGGCGuAG- -5'
32812 3' -45.5 NC_007346.1 + 209531 0.66 1
Target:  5'- --aUCACCAAuggucuuccGGAUGUgAUACCGCAUCc -3'
miRNA:   3'- agaAGUGGUU---------CUUAUG-UAUGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 95394 0.66 1
Target:  5'- -aUUCuACUAucAGGAUACAUugCaGCGUCa -3'
miRNA:   3'- agAAG-UGGU--UCUUAUGUAugG-CGUAG- -5'
32812 3' -45.5 NC_007346.1 + 273565 0.67 1
Target:  5'- --cUCACCGAGAAUGaAUggaguaaauguaAUCGCAUCc -3'
miRNA:   3'- agaAGUGGUUCUUAUgUA------------UGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 282869 0.68 1
Target:  5'- uUCUUCugCAcGA--GCAUAuaGCAUCg -3'
miRNA:   3'- -AGAAGugGUuCUuaUGUAUggCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 264933 0.7 0.999991
Target:  5'- --gUCGUCGAGGAUGCGUGCuCGCAa- -3'
miRNA:   3'- agaAGUGGUUCUUAUGUAUG-GCGUag -5'
32812 3' -45.5 NC_007346.1 + 191335 0.66 1
Target:  5'- aCUUCACCAGGAcgAUGgGUACa--AUCu -3'
miRNA:   3'- aGAAGUGGUUCU--UAUgUAUGgcgUAG- -5'
32812 3' -45.5 NC_007346.1 + 156908 0.7 0.999994
Target:  5'- aUUUCGgCAuucuuGAAUGCAgcgACUGCAUCa -3'
miRNA:   3'- aGAAGUgGUu----CUUAUGUa--UGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 248807 0.67 1
Target:  5'- ---aCACCG-----ACGUGCCGCAUCc -3'
miRNA:   3'- agaaGUGGUucuuaUGUAUGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 42048 0.66 1
Target:  5'- aUCgUUCGCUu-GAAUACG-GCCGUAUCc -3'
miRNA:   3'- -AG-AAGUGGuuCUUAUGUaUGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 219663 0.69 0.999997
Target:  5'- ---cCACC-AGAGguugACAUACCGCAg- -3'
miRNA:   3'- agaaGUGGuUCUUa---UGUAUGGCGUag -5'
32812 3' -45.5 NC_007346.1 + 45465 0.74 0.999073
Target:  5'- -gUUUACCAAGcauUACAgacgugUACCGCAUCa -3'
miRNA:   3'- agAAGUGGUUCuu-AUGU------AUGGCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 186254 0.69 0.999999
Target:  5'- aUUUUCACCGGGggUaaGCGUuaaUGUAUCa -3'
miRNA:   3'- -AGAAGUGGUUCuuA--UGUAug-GCGUAG- -5'
32812 3' -45.5 NC_007346.1 + 353474 0.69 0.999999
Target:  5'- ---gCACCGAGAccccacagAUGCGUGCUGCGc- -3'
miRNA:   3'- agaaGUGGUUCU--------UAUGUAUGGCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.