miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32812 5' -44.3 NC_007346.1 + 6842 0.66 1
Target:  5'- ---uUGcGGUACUAUaugAUAGUACCu -3'
miRNA:   3'- gccuACuCCAUGAUAguaUAUCAUGG- -5'
32812 5' -44.3 NC_007346.1 + 295150 0.66 1
Target:  5'- gCGGcgGAGGUACUG-C----GGUGCUc -3'
miRNA:   3'- -GCCuaCUCCAUGAUaGuauaUCAUGG- -5'
32812 5' -44.3 NC_007346.1 + 119161 0.67 1
Target:  5'- uGGAUGAuucGGUaACUAUCAUcAUAaaACCa -3'
miRNA:   3'- gCCUACU---CCA-UGAUAGUA-UAUcaUGG- -5'
32812 5' -44.3 NC_007346.1 + 245746 0.67 1
Target:  5'- gGGAucagUGGGGUACaUAUCAguuUGGguuCCg -3'
miRNA:   3'- gCCU----ACUCCAUG-AUAGUau-AUCau-GG- -5'
32812 5' -44.3 NC_007346.1 + 203755 0.68 1
Target:  5'- gGGA--AGGUaaACUGUCAUuUGGUACa -3'
miRNA:   3'- gCCUacUCCA--UGAUAGUAuAUCAUGg -5'
32812 5' -44.3 NC_007346.1 + 312689 0.66 1
Target:  5'- --aGUGAGGUaggcguaucauaagcACUAUCAUAUAcaaUGCCa -3'
miRNA:   3'- gccUACUCCA---------------UGAUAGUAUAUc--AUGG- -5'
32812 5' -44.3 NC_007346.1 + 201199 0.67 1
Target:  5'- uGuGGUGAuGGUGgUGUag-AUGGUACCg -3'
miRNA:   3'- gC-CUACU-CCAUgAUAguaUAUCAUGG- -5'
32812 5' -44.3 NC_007346.1 + 368823 0.69 1
Target:  5'- aCGGAuuuguaUGGGGUGCUGUaCAUAuugaUAGuUAUCg -3'
miRNA:   3'- -GCCU------ACUCCAUGAUA-GUAU----AUC-AUGG- -5'
32812 5' -44.3 NC_007346.1 + 292754 0.69 1
Target:  5'- uCGGAUaccGGGU-CUAguUCAUcgGGUACCg -3'
miRNA:   3'- -GCCUAc--UCCAuGAU--AGUAuaUCAUGG- -5'
32812 5' -44.3 NC_007346.1 + 17322 0.7 0.999999
Target:  5'- aCGGAUGGaGUACUGUCuucggucgaaauuGUACCg -3'
miRNA:   3'- -GCCUACUcCAUGAUAGuauau--------CAUGG- -5'
32812 5' -44.3 NC_007346.1 + 263331 0.71 0.999999
Target:  5'- ----cGGGGUAC-GUCAUAaGGUACCg -3'
miRNA:   3'- gccuaCUCCAUGaUAGUAUaUCAUGG- -5'
32812 5' -44.3 NC_007346.1 + 88816 0.72 0.999996
Target:  5'- uCGGAUGAaaucaauguuGGUGC-AUCAUuUAGUGCa -3'
miRNA:   3'- -GCCUACU----------CCAUGaUAGUAuAUCAUGg -5'
32812 5' -44.3 NC_007346.1 + 406799 0.73 0.99996
Target:  5'- aGGAUGuuGGUACacuUGUCAcgGUAGUAUCu -3'
miRNA:   3'- gCCUACu-CCAUG---AUAGUa-UAUCAUGG- -5'
32812 5' -44.3 NC_007346.1 + 286124 0.74 0.999882
Target:  5'- aGGAaagauUGAGGccaUGCUAUgGUAUGGUGCa -3'
miRNA:   3'- gCCU-----ACUCC---AUGAUAgUAUAUCAUGg -5'
32812 5' -44.3 NC_007346.1 + 175063 0.74 0.999848
Target:  5'- aCGuGAUGGGGUugaacaGCUAUCGUuUGGUauGCCa -3'
miRNA:   3'- -GC-CUACUCCA------UGAUAGUAuAUCA--UGG- -5'
32812 5' -44.3 NC_007346.1 + 6405 1.16 0.047945
Target:  5'- uCGGAUGAGGUACUAUCAUAUAGUACCg -3'
miRNA:   3'- -GCCUACUCCAUGAUAGUAUAUCAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.