Results 21 - 40 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 128560 | 0.68 | 0.999312 |
Target: 5'- uGGCGGUgGCGgugAUGGCGAUGCagaUgGCg -3' miRNA: 3'- gUUGUUAgUGU---UACCGCUGCGg--AgCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 165875 | 0.66 | 0.999929 |
Target: 5'- uCAGCGAUUggaAGUGGCGAaggGCgUCGUc -3' miRNA: 3'- -GUUGUUAGug-UUACCGCUg--CGgAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 273939 | 0.79 | 0.796445 |
Target: 5'- cCAACGcgCGCAugguGCGACGUCUCGCa -3' miRNA: 3'- -GUUGUuaGUGUuac-CGCUGCGGAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 248711 | 0.71 | 0.991051 |
Target: 5'- cCAACAAUUuauuAUGGCaGCGCCUaCGCc -3' miRNA: 3'- -GUUGUUAGugu-UACCGcUGCGGA-GCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 399592 | 0.66 | 0.999947 |
Target: 5'- aGGCAAagCGCGAcuucagguuuaaucaGGCGACGCUUCaGCa -3' miRNA: 3'- gUUGUUa-GUGUUa--------------CCGCUGCGGAG-CG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 78471 | 0.66 | 0.999946 |
Target: 5'- --gUAAUUACAAUGGCcaacucaaaGCGCCgCGCc -3' miRNA: 3'- guuGUUAGUGUUACCGc--------UGCGGaGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 390877 | 0.66 | 0.999906 |
Target: 5'- uUAugGAgcUCGCAAccgagcuUGGCG--GCCUCGCa -3' miRNA: 3'- -GUugUU--AGUGUU-------ACCGCugCGGAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 23150 | 0.66 | 0.999883 |
Target: 5'- cCAAUGAgacUUAC--UGGUaACGCCUCGCa -3' miRNA: 3'- -GUUGUU---AGUGuuACCGcUGCGGAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 345237 | 0.66 | 0.999883 |
Target: 5'- cCGACGcuaGCccUGGgGugGCCUUGCa -3' miRNA: 3'- -GUUGUuagUGuuACCgCugCGGAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 367637 | 0.67 | 0.99985 |
Target: 5'- aCAGCGGUaCACuccacUGGCGAUGCCa--- -3' miRNA: 3'- -GUUGUUA-GUGuu---ACCGCUGCGGagcg -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 68613 | 0.67 | 0.999762 |
Target: 5'- ---aGGUCACAAUGGUGAaauuCGUCUCcCa -3' miRNA: 3'- guugUUAGUGUUACCGCU----GCGGAGcG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 252346 | 0.67 | 0.999727 |
Target: 5'- gCAACAcUC-CGGUGGCaaugugggcggaucuGACGCCgaCGCa -3' miRNA: 3'- -GUUGUuAGuGUUACCG---------------CUGCGGa-GCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 216580 | 0.67 | 0.999702 |
Target: 5'- uGGCAcgCGCgAAUGuCGGCGUUUCGCc -3' miRNA: 3'- gUUGUuaGUG-UUACcGCUGCGGAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 255844 | 0.67 | 0.999629 |
Target: 5'- -uGCAGUCACGugguauagcaAUGGCGgGCGCaUUGCc -3' miRNA: 3'- guUGUUAGUGU----------UACCGC-UGCGgAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 261151 | 0.68 | 0.999402 |
Target: 5'- uGGCGAguUgGCGAguugGGCGACGCgcguccgaguguggCUCGCg -3' miRNA: 3'- gUUGUU--AgUGUUa---CCGCUGCG--------------GAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 349803 | 0.68 | 0.99899 |
Target: 5'- aCGACGGcgGCGGUGGCGGCGgCg-GCg -3' miRNA: 3'- -GUUGUUagUGUUACCGCUGCgGagCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 238937 | 0.69 | 0.998545 |
Target: 5'- gGAUGAUgACGAgcugaUGGCGGCGaugaaCUCGCc -3' miRNA: 3'- gUUGUUAgUGUU-----ACCGCUGCg----GAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 181851 | 0.69 | 0.998545 |
Target: 5'- uGGCGGUgGCAAUGGCGGCGgUgguggUgGCg -3' miRNA: 3'- gUUGUUAgUGUUACCGCUGCgG-----AgCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 71285 | 0.69 | 0.997945 |
Target: 5'- gCAACAucuaauggaGUCAUAuaacGUGGauuaGCGCCUCGCu -3' miRNA: 3'- -GUUGU---------UAGUGU----UACCgc--UGCGGAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 300221 | 0.7 | 0.995492 |
Target: 5'- --cCAAUC-CAauGUGGCGAUG-CUCGCg -3' miRNA: 3'- guuGUUAGuGU--UACCGCUGCgGAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home