Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 46537 | 1.13 | 0.014803 |
Target: 5'- cCAACAAUCACAAUGGCGACGCCUCGCg -3' miRNA: 3'- -GUUGUUAGUGUUACCGCUGCGGAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 165577 | 0.66 | 0.999946 |
Target: 5'- gCGGCGAUgGCGAUGGUGGCGacgaaggUgGCg -3' miRNA: 3'- -GUUGUUAgUGUUACCGCUGCgg-----AgCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 206635 | 0.66 | 0.999946 |
Target: 5'- aAGCAGUCGCGGauGCGAcCGCaguggCGCg -3' miRNA: 3'- gUUGUUAGUGUUacCGCU-GCGga---GCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 372186 | 0.66 | 0.999968 |
Target: 5'- gAACAGUCgaauggaagauuGCcAUGGCGACGUagagacCGCa -3' miRNA: 3'- gUUGUUAG------------UGuUACCGCUGCGga----GCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 50010 | 0.7 | 0.995492 |
Target: 5'- uGGCGAUgGCGaggcggauuGUGGCGACGCUggUgGCg -3' miRNA: 3'- gUUGUUAgUGU---------UACCGCUGCGG--AgCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 322884 | 0.69 | 0.998267 |
Target: 5'- gAGCAcgUACAAUGGCuGCGUCUaaaGUa -3' miRNA: 3'- gUUGUuaGUGUUACCGcUGCGGAg--CG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 322612 | 0.69 | 0.998785 |
Target: 5'- gCAACAgcGUgGCGcgGGUGcauUGCCUCGUa -3' miRNA: 3'- -GUUGU--UAgUGUuaCCGCu--GCGGAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 264510 | 0.69 | 0.998785 |
Target: 5'- --cCGGaCACAuuuuccGGUGACGUCUCGCg -3' miRNA: 3'- guuGUUaGUGUua----CCGCUGCGGAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 274413 | 0.68 | 0.999437 |
Target: 5'- cCGugAuUgGCA-UGGCGAcugcgucaaaCGCCUCGCg -3' miRNA: 3'- -GUugUuAgUGUuACCGCU----------GCGGAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 197810 | 0.67 | 0.99985 |
Target: 5'- gCGAUggUgGCGGUGGCGAUGgCggugGCg -3' miRNA: 3'- -GUUGuuAgUGUUACCGCUGCgGag--CG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 163176 | 0.68 | 0.999437 |
Target: 5'- -uACAGUCGCAGUGGUGAUGgg-CGg -3' miRNA: 3'- guUGUUAGUGUUACCGCUGCggaGCg -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 81192 | 0.74 | 0.966784 |
Target: 5'- uCGGCGAUCGCcc-GGCGuCGUUUCGCu -3' miRNA: 3'- -GUUGUUAGUGuuaCCGCuGCGGAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 256315 | 0.66 | 0.999883 |
Target: 5'- cCAAC--UC-CAGUGGUG-CGCC-CGCg -3' miRNA: 3'- -GUUGuuAGuGUUACCGCuGCGGaGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 134156 | 0.72 | 0.985459 |
Target: 5'- -uACAAUCACAAUGuccGCGGCGCgUC-Ca -3' miRNA: 3'- guUGUUAGUGUUAC---CGCUGCGgAGcG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 135373 | 0.68 | 0.999164 |
Target: 5'- aGACGAUaagccauaCGCAGUGGaCGACGCCa--- -3' miRNA: 3'- gUUGUUA--------GUGUUACC-GCUGCGGagcg -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 86432 | 0.66 | 0.999899 |
Target: 5'- cCAGCGuUCGCGGUGaGCGcaucacgcucggcCGCCUCGa -3' miRNA: 3'- -GUUGUuAGUGUUAC-CGCu------------GCGGAGCg -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 40154 | 0.66 | 0.999968 |
Target: 5'- uCAAUGcgUGC-AUGGCGACGCacgUCGUu -3' miRNA: 3'- -GUUGUuaGUGuUACCGCUGCGg--AGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 342315 | 0.71 | 0.994003 |
Target: 5'- cCAGCAcUUGguGUugGGUGGCGCCUUGCa -3' miRNA: 3'- -GUUGUuAGUguUA--CCGCUGCGGAGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 80136 | 0.69 | 0.998545 |
Target: 5'- -uGCAAUCACAucagGUGGaUGAUGCCagaaaUCGUg -3' miRNA: 3'- guUGUUAGUGU----UACC-GCUGCGG-----AGCG- -5' |
|||||||
32815 | 5' | -50.3 | NC_007346.1 | + | 91751 | 0.67 | 0.999762 |
Target: 5'- --uUAAUCACAuuAUGGaaACGgCUCGCa -3' miRNA: 3'- guuGUUAGUGU--UACCgcUGCgGAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home