miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32815 5' -50.3 NC_007346.1 + 23150 0.66 0.999883
Target:  5'- cCAAUGAgacUUAC--UGGUaACGCCUCGCa -3'
miRNA:   3'- -GUUGUU---AGUGuuACCGcUGCGGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 40154 0.66 0.999968
Target:  5'- uCAAUGcgUGC-AUGGCGACGCacgUCGUu -3'
miRNA:   3'- -GUUGUuaGUGuUACCGCUGCGg--AGCG- -5'
32815 5' -50.3 NC_007346.1 + 46537 1.13 0.014803
Target:  5'- cCAACAAUCACAAUGGCGACGCCUCGCg -3'
miRNA:   3'- -GUUGUUAGUGUUACCGCUGCGGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 50010 0.7 0.995492
Target:  5'- uGGCGAUgGCGaggcggauuGUGGCGACGCUggUgGCg -3'
miRNA:   3'- gUUGUUAgUGU---------UACCGCUGCGG--AgCG- -5'
32815 5' -50.3 NC_007346.1 + 68613 0.67 0.999762
Target:  5'- ---aGGUCACAAUGGUGAaauuCGUCUCcCa -3'
miRNA:   3'- guugUUAGUGUUACCGCU----GCGGAGcG- -5'
32815 5' -50.3 NC_007346.1 + 71285 0.69 0.997945
Target:  5'- gCAACAucuaauggaGUCAUAuaacGUGGauuaGCGCCUCGCu -3'
miRNA:   3'- -GUUGU---------UAGUGU----UACCgc--UGCGGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 78471 0.66 0.999946
Target:  5'- --gUAAUUACAAUGGCcaacucaaaGCGCCgCGCc -3'
miRNA:   3'- guuGUUAGUGUUACCGc--------UGCGGaGCG- -5'
32815 5' -50.3 NC_007346.1 + 80136 0.69 0.998545
Target:  5'- -uGCAAUCACAucagGUGGaUGAUGCCagaaaUCGUg -3'
miRNA:   3'- guUGUUAGUGU----UACC-GCUGCGG-----AGCG- -5'
32815 5' -50.3 NC_007346.1 + 81192 0.74 0.966784
Target:  5'- uCGGCGAUCGCcc-GGCGuCGUUUCGCu -3'
miRNA:   3'- -GUUGUUAGUGuuaCCGCuGCGGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 86432 0.66 0.999899
Target:  5'- cCAGCGuUCGCGGUGaGCGcaucacgcucggcCGCCUCGa -3'
miRNA:   3'- -GUUGUuAGUGUUAC-CGCu------------GCGGAGCg -5'
32815 5' -50.3 NC_007346.1 + 91751 0.67 0.999762
Target:  5'- --uUAAUCACAuuAUGGaaACGgCUCGCa -3'
miRNA:   3'- guuGUUAGUGU--UACCgcUGCgGAGCG- -5'
32815 5' -50.3 NC_007346.1 + 128560 0.68 0.999312
Target:  5'- uGGCGGUgGCGgugAUGGCGAUGCagaUgGCg -3'
miRNA:   3'- gUUGUUAgUGU---UACCGCUGCGg--AgCG- -5'
32815 5' -50.3 NC_007346.1 + 134156 0.72 0.985459
Target:  5'- -uACAAUCACAAUGuccGCGGCGCgUC-Ca -3'
miRNA:   3'- guUGUUAGUGUUAC---CGCUGCGgAGcG- -5'
32815 5' -50.3 NC_007346.1 + 135373 0.68 0.999164
Target:  5'- aGACGAUaagccauaCGCAGUGGaCGACGCCa--- -3'
miRNA:   3'- gUUGUUA--------GUGUUACC-GCUGCGGagcg -5'
32815 5' -50.3 NC_007346.1 + 163176 0.68 0.999437
Target:  5'- -uACAGUCGCAGUGGUGAUGgg-CGg -3'
miRNA:   3'- guUGUUAGUGUUACCGCUGCggaGCg -5'
32815 5' -50.3 NC_007346.1 + 165125 0.66 0.999968
Target:  5'- ---aGAUUGCAGUGGCGACucaaCCaagCGCu -3'
miRNA:   3'- guugUUAGUGUUACCGCUGc---GGa--GCG- -5'
32815 5' -50.3 NC_007346.1 + 165577 0.66 0.999946
Target:  5'- gCGGCGAUgGCGAUGGUGGCGacgaaggUgGCg -3'
miRNA:   3'- -GUUGUUAgUGUUACCGCUGCgg-----AgCG- -5'
32815 5' -50.3 NC_007346.1 + 165875 0.66 0.999929
Target:  5'- uCAGCGAUUggaAGUGGCGAaggGCgUCGUc -3'
miRNA:   3'- -GUUGUUAGug-UUACCGCUg--CGgAGCG- -5'
32815 5' -50.3 NC_007346.1 + 181851 0.69 0.998545
Target:  5'- uGGCGGUgGCAAUGGCGGCGgUgguggUgGCg -3'
miRNA:   3'- gUUGUUAgUGUUACCGCUGCgG-----AgCG- -5'
32815 5' -50.3 NC_007346.1 + 197810 0.67 0.99985
Target:  5'- gCGAUggUgGCGGUGGCGAUGgCggugGCg -3'
miRNA:   3'- -GUUGuuAgUGUUACCGCUGCgGag--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.