miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32818 3' -49.5 NC_007346.1 + 257403 0.66 0.999969
Target:  5'- --gGCGgauUGCGUUCUUggUAAUUCCGAUGg -3'
miRNA:   3'- uaaUGC---ACGUAAGAG--GUUAGGGCUGC- -5'
32818 3' -49.5 NC_007346.1 + 357062 0.66 0.999957
Target:  5'- uGUUAC-UGCuccaguugacaUC-CCAGUCCCGACGa -3'
miRNA:   3'- -UAAUGcACGua---------AGaGGUUAGGGCUGC- -5'
32818 3' -49.5 NC_007346.1 + 397666 0.67 0.99993
Target:  5'- ----aGUGCAUcucCUCCAAUCCgGAUc -3'
miRNA:   3'- uaaugCACGUAa--GAGGUUAGGgCUGc -5'
32818 3' -49.5 NC_007346.1 + 244882 0.67 0.99993
Target:  5'- --cGCGUGCGUcCUCCucaCuuGACGc -3'
miRNA:   3'- uaaUGCACGUAaGAGGuuaGggCUGC- -5'
32818 3' -49.5 NC_007346.1 + 74701 0.67 0.999909
Target:  5'- -aUACGcaUGCAcugUUCCGAUCCCGGg- -3'
miRNA:   3'- uaAUGC--ACGUaa-GAGGUUAGGGCUgc -5'
32818 3' -49.5 NC_007346.1 + 338246 0.67 0.999851
Target:  5'- --cACGUGUuggUUUUAGUCCCGGCa -3'
miRNA:   3'- uaaUGCACGuaaGAGGUUAGGGCUGc -5'
32818 3' -49.5 NC_007346.1 + 129703 0.68 0.999628
Target:  5'- --aACGUGCGUUgaUCAuAUCCCGAgCGg -3'
miRNA:   3'- uaaUGCACGUAAgaGGU-UAGGGCU-GC- -5'
32818 3' -49.5 NC_007346.1 + 360917 0.69 0.999155
Target:  5'- --gAUGUGUAUUCUUCAAUCuuGgACa -3'
miRNA:   3'- uaaUGCACGUAAGAGGUUAGggC-UGc -5'
32818 3' -49.5 NC_007346.1 + 360863 0.69 0.998767
Target:  5'- -aUugGUGCAUUUggUgCGAUCCCGgaACGg -3'
miRNA:   3'- uaAugCACGUAAG--AgGUUAGGGC--UGC- -5'
32818 3' -49.5 NC_007346.1 + 286931 0.7 0.998522
Target:  5'- --gGCGUGCAUUUUCCAccaagAUCCaaacuCGGCa -3'
miRNA:   3'- uaaUGCACGUAAGAGGU-----UAGG-----GCUGc -5'
32818 3' -49.5 NC_007346.1 + 227891 0.7 0.998237
Target:  5'- --gGCG-GCG-UCUCaguCAAUCCCGGCGg -3'
miRNA:   3'- uaaUGCaCGUaAGAG---GUUAGGGCUGC- -5'
32818 3' -49.5 NC_007346.1 + 227849 0.7 0.998237
Target:  5'- --gGCG-GCG-UCUCaguCAAUCCCGGCGg -3'
miRNA:   3'- uaaUGCaCGUaAGAG---GUUAGGGCUGC- -5'
32818 3' -49.5 NC_007346.1 + 16109 0.7 0.997527
Target:  5'- -----uUGCAUgUUCCGGUCCCGAUGa -3'
miRNA:   3'- uaaugcACGUAaGAGGUUAGGGCUGC- -5'
32818 3' -49.5 NC_007346.1 + 218640 0.7 0.99709
Target:  5'- -cUGCGUGUAUaUUCCaAAUCCCG-CGa -3'
miRNA:   3'- uaAUGCACGUAaGAGG-UUAGGGCuGC- -5'
32818 3' -49.5 NC_007346.1 + 280443 0.71 0.996026
Target:  5'- --cGCG-GCAgggUCgcauccaCCAAUCCCGGCGg -3'
miRNA:   3'- uaaUGCaCGUa--AGa------GGUUAGGGCUGC- -5'
32818 3' -49.5 NC_007346.1 + 98227 1.07 0.04098
Target:  5'- cAUUACGUGCAUUCUCCAAUCCCGACGc -3'
miRNA:   3'- -UAAUGCACGUAAGAGGUUAGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.