miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32819 5' -55.7 NC_007346.1 + 361634 0.66 0.986949
Target:  5'- uGUCAUAAccgGUaaugcggagaaCCGCGGCG-GUCCAUg -3'
miRNA:   3'- -UAGUGUUa--CA-----------GGCGCCGCgCAGGUAg -5'
32819 5' -55.7 NC_007346.1 + 274978 0.66 0.985385
Target:  5'- cUCGCGGUGcccaugCUGCccguCGCGUCCGUCa -3'
miRNA:   3'- uAGUGUUACa-----GGCGcc--GCGCAGGUAG- -5'
32819 5' -55.7 NC_007346.1 + 390481 0.66 0.983682
Target:  5'- --aGCAuucGUGUCCGCGGgGCaaCCAUg -3'
miRNA:   3'- uagUGU---UACAGGCGCCgCGcaGGUAg -5'
32819 5' -55.7 NC_007346.1 + 264986 0.66 0.981832
Target:  5'- -gCGCAAUGaUUGCGGCGgguguCGUCCGUg -3'
miRNA:   3'- uaGUGUUACaGGCGCCGC-----GCAGGUAg -5'
32819 5' -55.7 NC_007346.1 + 258316 0.7 0.92249
Target:  5'- -gCGCGGgaaucuaCGCGGCGUGUCCGUUg -3'
miRNA:   3'- uaGUGUUacag---GCGCCGCGCAGGUAG- -5'
32819 5' -55.7 NC_007346.1 + 244851 0.7 0.91158
Target:  5'- uAUCACAaacAUGUgaCGCGaCGUGUCCGUCu -3'
miRNA:   3'- -UAGUGU---UACAg-GCGCcGCGCAGGUAG- -5'
32819 5' -55.7 NC_007346.1 + 50239 0.7 0.905805
Target:  5'- --aGCAAUGgCCGCGGCgGCGgaaCAUCa -3'
miRNA:   3'- uagUGUUACaGGCGCCG-CGCag-GUAG- -5'
32819 5' -55.7 NC_007346.1 + 372500 0.71 0.866803
Target:  5'- -aUACGugGUCCgGCGGUGCGUCCuUCg -3'
miRNA:   3'- uaGUGUuaCAGG-CGCCGCGCAGGuAG- -5'
32819 5' -55.7 NC_007346.1 + 285137 0.71 0.852234
Target:  5'- cGUC-CAGUggcgcGUCCaGUGGCGCGUCCAg- -3'
miRNA:   3'- -UAGuGUUA-----CAGG-CGCCGCGCAGGUag -5'
32819 5' -55.7 NC_007346.1 + 174824 0.72 0.836944
Target:  5'- uUCAUaAAUGUCUGCGGUGUgGUCCcgCa -3'
miRNA:   3'- uAGUG-UUACAGGCGCCGCG-CAGGuaG- -5'
32819 5' -55.7 NC_007346.1 + 134159 1.07 0.009885
Target:  5'- aAUCACAAUGUCCGCGGCGCGUCCAUCu -3'
miRNA:   3'- -UAGUGUUACAGGCGCCGCGCAGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.