miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32822 3' -49.8 NC_007346.1 + 353589 0.66 0.999987
Target:  5'- aCUUcUCCGAuGUCUCCACCcugGAGAUc- -3'
miRNA:   3'- -GGAuAGGUUcCAGAGGUGG---UUCUAcg -5'
32822 3' -49.8 NC_007346.1 + 163452 0.66 0.999987
Target:  5'- aUUGUCCAGGuGUCUC-ACCcGGuucUGCg -3'
miRNA:   3'- gGAUAGGUUC-CAGAGgUGGuUCu--ACG- -5'
32822 3' -49.8 NC_007346.1 + 66556 0.67 0.999938
Target:  5'- aCCUGUgUAacagcagguucaaagGGGUCUCCGCUAAauauUGCu -3'
miRNA:   3'- -GGAUAgGU---------------UCCAGAGGUGGUUcu--ACG- -5'
32822 3' -49.8 NC_007346.1 + 120636 0.68 0.999817
Target:  5'- uCUUGUUUAcgauGGUCUUCGCCAAGAa-- -3'
miRNA:   3'- -GGAUAGGUu---CCAGAGGUGGUUCUacg -5'
32822 3' -49.8 NC_007346.1 + 169422 0.68 0.999769
Target:  5'- ---uUCCA---UCUCCACCGAuGAUGCc -3'
miRNA:   3'- ggauAGGUuccAGAGGUGGUU-CUACG- -5'
32822 3' -49.8 NC_007346.1 + 116512 0.68 0.999753
Target:  5'- -aUAUCCAccGGUauaUCCACCGccuguuauacuugcAGAUGCu -3'
miRNA:   3'- ggAUAGGUu-CCAg--AGGUGGU--------------UCUACG- -5'
32822 3' -49.8 NC_007346.1 + 180246 0.68 0.999711
Target:  5'- aUUGUCCAGugcggcccacGGUCUCCGCCuucacUGCc -3'
miRNA:   3'- gGAUAGGUU----------CCAGAGGUGGuucu-ACG- -5'
32822 3' -49.8 NC_007346.1 + 268352 0.69 0.999017
Target:  5'- -gUGUCCGAcuGGUagaCCACCGcGAUGCa -3'
miRNA:   3'- ggAUAGGUU--CCAga-GGUGGUuCUACG- -5'
32822 3' -49.8 NC_007346.1 + 51154 0.7 0.998583
Target:  5'- uCCUAUCCAAGGUg-CCAUacc-AUGCg -3'
miRNA:   3'- -GGAUAGGUUCCAgaGGUGguucUACG- -5'
32822 3' -49.8 NC_007346.1 + 127719 0.7 0.997996
Target:  5'- ----aCCAAGuccGUCUCCACCAAGuccGCu -3'
miRNA:   3'- ggauaGGUUC---CAGAGGUGGUUCua-CG- -5'
32822 3' -49.8 NC_007346.1 + 353244 0.71 0.994682
Target:  5'- aCUGUCCAugaucuuuucaccgAGGacaUUUCCACCuuGGUGCa -3'
miRNA:   3'- gGAUAGGU--------------UCC---AGAGGUGGuuCUACG- -5'
32822 3' -49.8 NC_007346.1 + 171138 0.71 0.993882
Target:  5'- aCCaUGUCCAAgGGUCUUaagaaguacauucgUACCAAGAgugGCa -3'
miRNA:   3'- -GG-AUAGGUU-CCAGAG--------------GUGGUUCUa--CG- -5'
32822 3' -49.8 NC_007346.1 + 188208 0.72 0.99123
Target:  5'- -aUAUCCGGGcaaaUCUCCACCGAGAagauuUGUa -3'
miRNA:   3'- ggAUAGGUUCc---AGAGGUGGUUCU-----ACG- -5'
32822 3' -49.8 NC_007346.1 + 361381 0.76 0.945324
Target:  5'- cCCgUGUCCAGGGgcacCUCCcaACCGGGAUGa -3'
miRNA:   3'- -GG-AUAGGUUCCa---GAGG--UGGUUCUACg -5'
32822 3' -49.8 NC_007346.1 + 171190 1.15 0.013404
Target:  5'- aCCUAUCCAAGGUCUCCACCAAGAUGCu -3'
miRNA:   3'- -GGAUAGGUUCCAGAGGUGGUUCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.