miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32823 3' -63 NC_007346.1 + 42785 0.72 0.502631
Target:  5'- ---aGCUGCUGCCCUUACCGCCUc-- -3'
miRNA:   3'- gaggUGGCGGCGGGAGUGGCGGAcua -5'
32823 3' -63 NC_007346.1 + 57122 0.75 0.330763
Target:  5'- cCUCCACCGCCuGaUCCUgcuccaccacCACCGCCUGGa -3'
miRNA:   3'- -GAGGUGGCGG-C-GGGA----------GUGGCGGACUa -5'
32823 3' -63 NC_007346.1 + 57189 0.7 0.592677
Target:  5'- -aCCACCuCCGCCaUCACCGCCa--- -3'
miRNA:   3'- gaGGUGGcGGCGGgAGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 57853 0.67 0.747751
Target:  5'- uUCCcCCGCCGCCCaauUCACCaCCa--- -3'
miRNA:   3'- gAGGuGGCGGCGGG---AGUGGcGGacua -5'
32823 3' -63 NC_007346.1 + 57879 0.68 0.694074
Target:  5'- -gCCACCGCCGUuaUUGCCGCCg--- -3'
miRNA:   3'- gaGGUGGCGGCGggAGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 57941 0.71 0.520233
Target:  5'- cCUCCAUCGCCGCcucCCUCGCCaCCUc-- -3'
miRNA:   3'- -GAGGUGGCGGCG---GGAGUGGcGGAcua -5'
32823 3' -63 NC_007346.1 + 58444 0.71 0.520233
Target:  5'- cCUCCACCGCCGCUUcCAuuuCCGgCUGGg -3'
miRNA:   3'- -GAGGUGGCGGCGGGaGU---GGCgGACUa -5'
32823 3' -63 NC_007346.1 + 58594 0.7 0.624063
Target:  5'- cCUCCGCCGCCGCCaucucccccaccaucUcccccaccuccgUCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGGCGG---------------G------------AGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 59250 0.71 0.529124
Target:  5'- uCUCCACCGCCauuGCCUcCAUCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGG---CGGGaGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 59731 0.7 0.620364
Target:  5'- -aCCuCCGCCGCCUUuacCACCGCCa--- -3'
miRNA:   3'- gaGGuGGCGGCGGGA---GUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 60144 0.7 0.574329
Target:  5'- -aCCGCCGCCGCCaUCACCaCCUc-- -3'
miRNA:   3'- gaGGUGGCGGCGGgAGUGGcGGAcua -5'
32823 3' -63 NC_007346.1 + 60716 0.68 0.721194
Target:  5'- cCUCCACCGCCaucaCCUCcgccuCCGUCUGc- -3'
miRNA:   3'- -GAGGUGGCGGcg--GGAGu----GGCGGACua -5'
32823 3' -63 NC_007346.1 + 61588 0.72 0.45984
Target:  5'- cCUCCACCGCCauuaCCUcCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGGcg--GGA-GUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 127608 0.72 0.502631
Target:  5'- -aCCACCGCCaaGUCCUcCACCGCCa--- -3'
miRNA:   3'- gaGGUGGCGG--CGGGA-GUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 127769 0.73 0.44327
Target:  5'- -aCCGCCaCCGCCgUCACCGCCa--- -3'
miRNA:   3'- gaGGUGGcGGCGGgAGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 127817 0.75 0.324053
Target:  5'- -gUCGCCGCCGCCaccaUCACCGCCa--- -3'
miRNA:   3'- gaGGUGGCGGCGGg---AGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 127932 0.78 0.225382
Target:  5'- uCUCCGCCGCCGCCaucaaucucaccUUCGCCGCCg--- -3'
miRNA:   3'- -GAGGUGGCGGCGG------------GAGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 128010 0.68 0.721194
Target:  5'- uCUCCACCGCCGCCgcCUcCACCa--UGGUg -3'
miRNA:   3'- -GAGGUGGCGGCGG--GA-GUGGcggACUA- -5'
32823 3' -63 NC_007346.1 + 128061 0.79 0.206215
Target:  5'- uCUCCACCGCCGCCaucaaucucaccUUCGCCGCCg--- -3'
miRNA:   3'- -GAGGUGGCGGCGG------------GAGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 128112 0.8 0.166663
Target:  5'- aCUCCACCGCCGCCaucugcaucgccaUCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGGCGGg------------AGUGGCGGacua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.