miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32823 3' -63 NC_007346.1 + 189121 1.04 0.003918
Target:  5'- uCUCCACCGCCGCCCUCACCGCCUGAUc -3'
miRNA:   3'- -GAGGUGGCGGCGGGAGUGGCGGACUA- -5'
32823 3' -63 NC_007346.1 + 307835 0.75 0.324053
Target:  5'- aCUCCACCuCCGCCUgcuccacCACCGCCUGc- -3'
miRNA:   3'- -GAGGUGGcGGCGGGa------GUGGCGGACua -5'
32823 3' -63 NC_007346.1 + 127817 0.75 0.324053
Target:  5'- -gUCGCCGCCGCCaccaUCACCGCCa--- -3'
miRNA:   3'- gaGGUGGCGGCGGg---AGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 311189 0.66 0.834394
Target:  5'- aCUCCaccgccauuACCGCCGCCaucuccaucgccaUUACCGCCg--- -3'
miRNA:   3'- -GAGG---------UGGCGGCGGg------------AGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 187601 0.8 0.176063
Target:  5'- -aCCGCCGCCGCCCUCcccACCGCCc--- -3'
miRNA:   3'- gaGGUGGCGGCGGGAG---UGGCGGacua -5'
32823 3' -63 NC_007346.1 + 311135 0.79 0.194526
Target:  5'- aCUCCACCGCCacaaucuccgccacuGCCUUCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGG---------------CGGGAGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 307484 0.79 0.206215
Target:  5'- cCUCCACCGCCgguGCCCcCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGG---CGGGaGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 308285 0.79 0.206215
Target:  5'- cCUCCACCGCCgguGCCCcCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGG---CGGGaGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 306927 0.77 0.256945
Target:  5'- gCUCCACCaCCGCCUgcucCACCGCCUGc- -3'
miRNA:   3'- -GAGGUGGcGGCGGGa---GUGGCGGACua -5'
32823 3' -63 NC_007346.1 + 307302 0.75 0.324053
Target:  5'- aCUCCACCuCCGCCUgcuccacCACCGCCUGc- -3'
miRNA:   3'- -GAGGUGGcGGCGGGa------GUGGCGGACua -5'
32823 3' -63 NC_007346.1 + 128291 0.77 0.256945
Target:  5'- -gCCACCGCCGCCaC-CGCCGCCgGGUu -3'
miRNA:   3'- gaGGUGGCGGCGG-GaGUGGCGGaCUA- -5'
32823 3' -63 NC_007346.1 + 309684 0.78 0.230405
Target:  5'- aCUCCACCGCCGCCaUCuCCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGGCGGgAGuGGCGGacua -5'
32823 3' -63 NC_007346.1 + 187646 0.85 0.07905
Target:  5'- cCUCCGCCGCCGCCCaCGCCGCCg--- -3'
miRNA:   3'- -GAGGUGGCGGCGGGaGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 305882 0.76 0.285936
Target:  5'- uUCCACCGCCGCCaUCuCCGCCUc-- -3'
miRNA:   3'- gAGGUGGCGGCGGgAGuGGCGGAcua -5'
32823 3' -63 NC_007346.1 + 187690 0.81 0.146462
Target:  5'- -cCCACCGCCGCCCUCACCuCCUc-- -3'
miRNA:   3'- gaGGUGGCGGCGGGAGUGGcGGAcua -5'
32823 3' -63 NC_007346.1 + 127932 0.78 0.225382
Target:  5'- uCUCCGCCGCCGCCaucaaucucaccUUCGCCGCCg--- -3'
miRNA:   3'- -GAGGUGGCGGCGG------------GAGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 188473 0.76 0.310941
Target:  5'- -aCCAUCGCCGCCaccaUCACCGCCa--- -3'
miRNA:   3'- gaGGUGGCGGCGGg---AGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 308108 0.75 0.324053
Target:  5'- aCUCCACCuCCGCCUgcuccacCACCGCCUGc- -3'
miRNA:   3'- -GAGGUGGcGGCGGGa------GUGGCGGACua -5'
32823 3' -63 NC_007346.1 + 128112 0.8 0.166663
Target:  5'- aCUCCACCGCCGCCaucugcaucgccaUCACCGCCa--- -3'
miRNA:   3'- -GAGGUGGCGGCGGg------------AGUGGCGGacua -5'
32823 3' -63 NC_007346.1 + 128061 0.79 0.206215
Target:  5'- uCUCCACCGCCGCCaucaaucucaccUUCGCCGCCg--- -3'
miRNA:   3'- -GAGGUGGCGGCGG------------GAGUGGCGGacua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.