miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32826 3' -46.2 NC_007346.1 + 178407 0.66 1
Target:  5'- uGAAACcguuggcaaUCGACuuGAGaagGUACAUGCCa -3'
miRNA:   3'- -CUUUG---------AGCUGu-UUCcaaCAUGUGCGG- -5'
32826 3' -46.2 NC_007346.1 + 214290 0.66 1
Target:  5'- gGAAGCUCG-CAGaaaaagucGGGUgGgaucGCAUGCCa -3'
miRNA:   3'- -CUUUGAGCuGUU--------UCCAaCa---UGUGCGG- -5'
32826 3' -46.2 NC_007346.1 + 40835 0.66 1
Target:  5'- -cAACUCGACAAuggauGGGagacuaacauuuUUGUaGCGCGCg -3'
miRNA:   3'- cuUUGAGCUGUU-----UCC------------AACA-UGUGCGg -5'
32826 3' -46.2 NC_007346.1 + 295143 0.68 1
Target:  5'- gGAAACggCGGCGGAGGUacugcgGUGCucccugggucacacaAUGCCa -3'
miRNA:   3'- -CUUUGa-GCUGUUUCCAa-----CAUG---------------UGCGG- -5'
32826 3' -46.2 NC_007346.1 + 266646 0.67 1
Target:  5'- -uGACUCugguucaaucucauGAUAAAGGUcgGUAUACGCa -3'
miRNA:   3'- cuUUGAG--------------CUGUUUCCAa-CAUGUGCGg -5'
32826 3' -46.2 NC_007346.1 + 178485 0.67 1
Target:  5'- cAGACUaCGGCGAcGGGgaGUACACGgUCa -3'
miRNA:   3'- cUUUGA-GCUGUU-UCCaaCAUGUGC-GG- -5'
32826 3' -46.2 NC_007346.1 + 139965 0.67 1
Target:  5'- uGAAUUUGACAguuuaAAGGUgacGUAacUACGCCa -3'
miRNA:   3'- cUUUGAGCUGU-----UUCCAa--CAU--GUGCGG- -5'
32826 3' -46.2 NC_007346.1 + 121183 0.67 1
Target:  5'- uGAACUCGuCAuacGaUGUACACGUCa -3'
miRNA:   3'- cUUUGAGCuGUuucCaACAUGUGCGG- -5'
32826 3' -46.2 NC_007346.1 + 226756 0.67 1
Target:  5'- gGAAGCauugUCGACAuggcAGGg-GUGCGgGCCg -3'
miRNA:   3'- -CUUUG----AGCUGUu---UCCaaCAUGUgCGG- -5'
32826 3' -46.2 NC_007346.1 + 201758 0.67 1
Target:  5'- aAAAgUCGGCGGGuucaaauccGGUUG-GCAUGCCa -3'
miRNA:   3'- cUUUgAGCUGUUU---------CCAACaUGUGCGG- -5'
32826 3' -46.2 NC_007346.1 + 282371 0.67 1
Target:  5'- uGAGCUuacUGACAAGGGUauuaaACACGCUu -3'
miRNA:   3'- cUUUGA---GCUGUUUCCAaca--UGUGCGG- -5'
32826 3' -46.2 NC_007346.1 + 338393 0.67 1
Target:  5'- gGAGAUUCGugGGuGGgcGcGCGCGUCu -3'
miRNA:   3'- -CUUUGAGCugUUuCCaaCaUGUGCGG- -5'
32826 3' -46.2 NC_007346.1 + 180008 0.67 1
Target:  5'- uGAuAC-CGGac-GGGUccUGUGCACGCCc -3'
miRNA:   3'- -CUuUGaGCUguuUCCA--ACAUGUGCGG- -5'
32826 3' -46.2 NC_007346.1 + 231177 0.67 1
Target:  5'- gGGAACUUGGCGuaaguuGGUUGguguuauaacaGCACGUCg -3'
miRNA:   3'- -CUUUGAGCUGUuu----CCAACa----------UGUGCGG- -5'
32826 3' -46.2 NC_007346.1 + 51014 0.69 0.999998
Target:  5'- cAAGCUCGAgAAGGGc--UGCuCGCCa -3'
miRNA:   3'- cUUUGAGCUgUUUCCaacAUGuGCGG- -5'
32826 3' -46.2 NC_007346.1 + 161670 0.69 0.999994
Target:  5'- aAGACUgGACAAaauGGGUUcaucggucgagucaaGUACACuGCCa -3'
miRNA:   3'- cUUUGAgCUGUU---UCCAA---------------CAUGUG-CGG- -5'
32826 3' -46.2 NC_007346.1 + 260319 0.69 0.999994
Target:  5'- aGAACUCGcGCGGAGGUcggGUACcCGUUg -3'
miRNA:   3'- cUUUGAGC-UGUUUCCAa--CAUGuGCGG- -5'
32826 3' -46.2 NC_007346.1 + 86531 0.69 0.999994
Target:  5'- --cGCUCGGCAuggaggacgacGAGGUUGga-GCGCg -3'
miRNA:   3'- cuuUGAGCUGU-----------UUCCAACaugUGCGg -5'
32826 3' -46.2 NC_007346.1 + 340179 0.7 0.999988
Target:  5'- aGAAACUUGGCGAAGGUUcauUugGgGCa -3'
miRNA:   3'- -CUUUGAGCUGUUUCCAAc--AugUgCGg -5'
32826 3' -46.2 NC_007346.1 + 365155 0.7 0.999983
Target:  5'- uAAGCUUGGCGGAGGUUG-GCugaGUCa -3'
miRNA:   3'- cUUUGAGCUGUUUCCAACaUGug-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.