miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32826 5' -47.2 NC_007346.1 + 33305 0.66 1
Target:  5'- -cAACugCAGCU--CUUGCuGCCGAGg -3'
miRNA:   3'- uaUUGugGUUGGuuGAAUG-CGGUUCa -5'
32826 5' -47.2 NC_007346.1 + 208134 0.66 1
Target:  5'- -gAAUGCgAGCCAGCUUG-GUCAAGa -3'
miRNA:   3'- uaUUGUGgUUGGUUGAAUgCGGUUCa -5'
32826 5' -47.2 NC_007346.1 + 3077 0.66 0.999999
Target:  5'- cUGACACaCAACUGAC--ACGCCAGc- -3'
miRNA:   3'- uAUUGUG-GUUGGUUGaaUGCGGUUca -5'
32826 5' -47.2 NC_007346.1 + 6350 0.66 0.999999
Target:  5'- -cAGCAUCAACCAACaaacgUGCGgCAAu- -3'
miRNA:   3'- uaUUGUGGUUGGUUGa----AUGCgGUUca -5'
32826 5' -47.2 NC_007346.1 + 228086 0.66 0.999999
Target:  5'- --uACACCAACUAacACUgacgaugaUACGCCAAc- -3'
miRNA:   3'- uauUGUGGUUGGU--UGA--------AUGCGGUUca -5'
32826 5' -47.2 NC_007346.1 + 353715 0.66 0.999998
Target:  5'- uAUGAUAUCAuauACCAuCUUAC-CCAAGUg -3'
miRNA:   3'- -UAUUGUGGU---UGGUuGAAUGcGGUUCA- -5'
32826 5' -47.2 NC_007346.1 + 6031 0.67 0.999996
Target:  5'- aGUAACACCGACUAuucagggUAUGCCGGu- -3'
miRNA:   3'- -UAUUGUGGUUGGUuga----AUGCGGUUca -5'
32826 5' -47.2 NC_007346.1 + 253533 0.67 0.999995
Target:  5'- -cGAUugCGAuCCAACUUcACGCCGAc- -3'
miRNA:   3'- uaUUGugGUU-GGUUGAA-UGCGGUUca -5'
32826 5' -47.2 NC_007346.1 + 300239 0.68 0.99999
Target:  5'- -aAGCACCGcCCAAa-UGCGCCAAu- -3'
miRNA:   3'- uaUUGUGGUuGGUUgaAUGCGGUUca -5'
32826 5' -47.2 NC_007346.1 + 259187 0.68 0.99999
Target:  5'- -cGACACCAugCugauuGCgUACGCCGAc- -3'
miRNA:   3'- uaUUGUGGUugGu----UGaAUGCGGUUca -5'
32826 5' -47.2 NC_007346.1 + 265026 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 263059 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccgcaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 257201 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccgcaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 256347 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 255426 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 254315 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 253582 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccGGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 251526 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 252811 0.68 0.999986
Target:  5'- --cGCAUCAGCCAACUccacaacuCGCCAccAGUu -3'
miRNA:   3'- uauUGUGGUUGGUUGAau------GCGGU--UCA- -5'
32826 5' -47.2 NC_007346.1 + 78463 0.68 0.999981
Target:  5'- -aAugGCCAACUcaaAGCgccGCGCCGGGUu -3'
miRNA:   3'- uaUugUGGUUGG---UUGaa-UGCGGUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.