Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32827 | 3' | -57 | NC_007346.1 | + | 188118 | 0.75 | 0.616178 |
Target: 5'- aGGAGGUGAGgGCggcgGUGGG-GACGGUGg -3' miRNA: 3'- gCUUCCGCUCgCG----UACCCgCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 188143 | 0.71 | 0.839491 |
Target: 5'- gCGAGGGUG-GCG-GUGGG-GACGGUGg -3' miRNA: 3'- -GCUUCCGCuCGCgUACCCgCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 188404 | 0.74 | 0.673239 |
Target: 5'- gCGGAGGCG-GCGauggcgGaGGCGGCGAUGg -3' miRNA: 3'- -GCUUCCGCuCGCgua---C-CCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 188831 | 0.66 | 0.977116 |
Target: 5'- uGGAGGCGA-CGgugGaGGUGACGGUGg -3' miRNA: 3'- gCUUCCGCUcGCguaC-CCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 189392 | 0.66 | 0.983134 |
Target: 5'- aGGAGGCGAuggaggugGCG-GUGauGGUGGCGGUGg -3' miRNA: 3'- gCUUCCGCU--------CGCgUAC--CCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 189557 | 0.71 | 0.823966 |
Target: 5'- aCGAucAGGCG-GUGa--GGGCGGCGGUGg -3' miRNA: 3'- -GCU--UCCGCuCGCguaCCCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 197895 | 0.67 | 0.969651 |
Target: 5'- uGGAGGCGAuggugGCGau--GGUGGCGGUGg -3' miRNA: 3'- gCUUCCGCU-----CGCguacCCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 198120 | 0.7 | 0.881979 |
Target: 5'- uGGAGGUGAugGUgGUggGGGCGAUGGUGg -3' miRNA: 3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 198288 | 0.7 | 0.881979 |
Target: 5'- uGGAGGUGAugGUgGUggGGGCGAUGGUGg -3' miRNA: 3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 198378 | 0.7 | 0.881979 |
Target: 5'- uGGAGGCGAugGUgGUggGGGUGAUGGUGg -3' miRNA: 3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 198495 | 0.7 | 0.881979 |
Target: 5'- uGGAGGUGAugGUgGUggGGGCGAUGGUGg -3' miRNA: 3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 198628 | 0.68 | 0.953605 |
Target: 5'- gCGggGGUGAugGUgGUggGGGUGAUGGUGg -3' miRNA: 3'- -GCuuCCGCU--CG-CGuaCCCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 198673 | 0.7 | 0.875353 |
Target: 5'- gCGggGGUGAugGUgGCggGGGUGAUGGUGg -3' miRNA: 3'- -GCuuCCGCU--CG-CGuaCCCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 198778 | 0.67 | 0.966815 |
Target: 5'- gCGggGGUGAugGUG-GUGGG-GGCGAUGg -3' miRNA: 3'- -GCuuCCGCU--CGCgUACCCgCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 198830 | 0.66 | 0.979066 |
Target: 5'- aGAuGGUG-GCGguUGagauggcGGCGGCGAUGg -3' miRNA: 3'- gCUuCCGCuCGCguAC-------CCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 200828 | 0.7 | 0.90069 |
Target: 5'- uGGAGGCGgagaugguucaGGUGCAaauGGUGACGGUGg -3' miRNA: 3'- gCUUCCGC-----------UCGCGUac-CCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 238467 | 1.09 | 0.006789 |
Target: 5'- gCGAAGGCGAGCGCAUGGGCGACGAUGg -3' miRNA: 3'- -GCUUCCGCUCGCGUACCCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 242893 | 0.72 | 0.807836 |
Target: 5'- aGAAGGCG-GUgGCAaaGGCGGCGAUGu -3' miRNA: 3'- gCUUCCGCuCG-CGUacCCGCUGCUAC- -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 256010 | 0.69 | 0.906527 |
Target: 5'- aGGAGGCGGuGCGCGau-GCGACGAa- -3' miRNA: 3'- gCUUCCGCU-CGCGUaccCGCUGCUac -5' |
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32827 | 3' | -57 | NC_007346.1 | + | 261155 | 0.7 | 0.888413 |
Target: 5'- cCGguGGCGAGUugGCGaguUGGGCGACGc-- -3' miRNA: 3'- -GCuuCCGCUCG--CGU---ACCCGCUGCuac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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