miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32827 3' -57 NC_007346.1 + 50012 0.67 0.957196
Target:  5'- gCGAuGGCGAG-GCGgauUGuGGCGACGcUGg -3'
miRNA:   3'- -GCUuCCGCUCgCGU---AC-CCGCUGCuAC- -5'
32827 3' -57 NC_007346.1 + 57505 0.72 0.807836
Target:  5'- gGGAGGUG-GCGaggGaGGCGGCGAUGg -3'
miRNA:   3'- gCUUCCGCuCGCguaC-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 58044 0.66 0.974796
Target:  5'- aGGAGGUgGAGCGgGUGGuggguucgguGaCGGCGGUGg -3'
miRNA:   3'- gCUUCCG-CUCGCgUACC----------C-GCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 58145 0.66 0.983134
Target:  5'- aCGGAGGUGGGgGagaugGUGGGgGA-GAUGg -3'
miRNA:   3'- -GCUUCCGCUCgCg----UACCCgCUgCUAC- -5'
32827 3' -57 NC_007346.1 + 59714 0.68 0.949817
Target:  5'- aGGAGGUG-GUGaugGcGGCGGCGGUGg -3'
miRNA:   3'- gCUUCCGCuCGCguaC-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 61187 0.68 0.941637
Target:  5'- gCGAAGGCGgagguGGCGCcggugauggcgGUGGGCugGGCGGa- -3'
miRNA:   3'- -GCUUCCGC-----UCGCG-----------UACCCG--CUGCUac -5'
32827 3' -57 NC_007346.1 + 128498 0.7 0.90069
Target:  5'- gCGAAGGUGAGauugauGGCGGCGGUGg -3'
miRNA:   3'- -GCUUCCGCUCgcguacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 128548 0.68 0.937241
Target:  5'- uGAuGGCGA-UGCAgauGGCGGCGGUGg -3'
miRNA:   3'- gCUuCCGCUcGCGUac-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 128593 0.66 0.981278
Target:  5'- uGGAGGCG-GUG-GUGGuGaCGGCGGUGg -3'
miRNA:   3'- gCUUCCGCuCGCgUACC-C-GCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 128720 0.68 0.937241
Target:  5'- cCGgcGGCGguGGCgGCGguGGCGGCGGUGg -3'
miRNA:   3'- -GCuuCCGC--UCG-CGUacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 165568 0.7 0.888413
Target:  5'- gCGAAGGUG-GCgGCGauGGCGAUGGUGg -3'
miRNA:   3'- -GCUUCCGCuCG-CGUacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 165598 0.71 0.839491
Target:  5'- aCGAAGGUGgcGGCGaugGuGGUGGCGAUGg -3'
miRNA:   3'- -GCUUCCGC--UCGCguaC-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 171891 0.7 0.875353
Target:  5'- cCGAAcacGGCGGGUaCGUGGGCGACu--- -3'
miRNA:   3'- -GCUU---CCGCUCGcGUACCCGCUGcuac -5'
32827 3' -57 NC_007346.1 + 181921 0.69 0.922814
Target:  5'- gCGGAGGUGAugGCggGGGUGGCGggGg -3'
miRNA:   3'- -GCUUCCGCUcgCGuaCCCGCUGCuaC- -5'
32827 3' -57 NC_007346.1 + 181960 0.69 0.922814
Target:  5'- gCGGAGGUGAugGCggGGGUGGCGggGg -3'
miRNA:   3'- -GCUUCCGCUcgCGuaCCCGCUGCuaC- -5'
32827 3' -57 NC_007346.1 + 184750 0.67 0.960591
Target:  5'- uGggGGUG-GUGgGgaGGGUGGCGGUGg -3'
miRNA:   3'- gCuuCCGCuCGCgUa-CCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 184783 0.67 0.960591
Target:  5'- uGggGGUG-GUGgGgaGGGUGGCGGUGg -3'
miRNA:   3'- gCuuCCGCuCGCgUa-CCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 187998 0.75 0.663762
Target:  5'- uGggGGCGAcgGCGgAUGaGGCGACGGc- -3'
miRNA:   3'- gCuuCCGCU--CGCgUAC-CCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 188049 0.85 0.201172
Target:  5'- uGAGGGUG-GCgGCGUGGGCGGCGGUGg -3'
miRNA:   3'- gCUUCCGCuCG-CGUACCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 188082 0.82 0.320831
Target:  5'- uGAGGGCG-GCgGCGUGGGCGGCGGc- -3'
miRNA:   3'- gCUUCCGCuCG-CGUACCCGCUGCUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.