miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32827 3' -57 NC_007346.1 + 238467 1.09 0.006789
Target:  5'- gCGAAGGCGAGCGCAUGGGCGACGAUGg -3'
miRNA:   3'- -GCUUCCGCUCGCGUACCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 188049 0.85 0.201172
Target:  5'- uGAGGGUG-GCgGCGUGGGCGGCGGUGg -3'
miRNA:   3'- gCUUCCGCuCG-CGUACCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 188082 0.82 0.320831
Target:  5'- uGAGGGCG-GCgGCGUGGGCGGCGGc- -3'
miRNA:   3'- gCUUCCGCuCG-CGUACCCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 188118 0.75 0.616178
Target:  5'- aGGAGGUGAGgGCggcgGUGGG-GACGGUGg -3'
miRNA:   3'- gCUUCCGCUCgCG----UACCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 187998 0.75 0.663762
Target:  5'- uGggGGCGAcgGCGgAUGaGGCGACGGc- -3'
miRNA:   3'- gCuuCCGCU--CGCgUAC-CCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 188404 0.74 0.673239
Target:  5'- gCGGAGGCG-GCGauggcgGaGGCGGCGAUGg -3'
miRNA:   3'- -GCUUCCGCuCGCgua---C-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 310545 0.72 0.782625
Target:  5'- uGAAGGUGAG-GCggGGGaGGCGGUGg -3'
miRNA:   3'- gCUUCCGCUCgCGuaCCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 308937 0.72 0.791155
Target:  5'- aGggGGCGAGgGgggGUGGG-GGCGGUGg -3'
miRNA:   3'- gCuuCCGCUCgCg--UACCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 306339 0.72 0.791155
Target:  5'- aGggGGCGAGgGgggGUGGG-GGCGGUGg -3'
miRNA:   3'- gCuuCCGCUCgCg--UACCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 57505 0.72 0.807836
Target:  5'- gGGAGGUG-GCGaggGaGGCGGCGAUGg -3'
miRNA:   3'- gCUUCCGCuCGCguaC-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 242893 0.72 0.807836
Target:  5'- aGAAGGCG-GUgGCAaaGGCGGCGAUGu -3'
miRNA:   3'- gCUUCCGCuCG-CGUacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 189557 0.71 0.823966
Target:  5'- aCGAucAGGCG-GUGa--GGGCGGCGGUGg -3'
miRNA:   3'- -GCU--UCCGCuCGCguaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 165598 0.71 0.839491
Target:  5'- aCGAAGGUGgcGGCGaugGuGGUGGCGAUGg -3'
miRNA:   3'- -GCUUCCGC--UCGCguaC-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 188143 0.71 0.839491
Target:  5'- gCGAGGGUG-GCG-GUGGG-GACGGUGg -3'
miRNA:   3'- -GCUUCCGCuCGCgUACCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 171891 0.7 0.875353
Target:  5'- cCGAAcacGGCGGGUaCGUGGGCGACu--- -3'
miRNA:   3'- -GCUU---CCGCUCGcGUACCCGCUGcuac -5'
32827 3' -57 NC_007346.1 + 198673 0.7 0.875353
Target:  5'- gCGggGGUGAugGUgGCggGGGUGAUGGUGg -3'
miRNA:   3'- -GCuuCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 310348 0.7 0.881979
Target:  5'- aGGAGGCGAGgGUggugGUGauGGCGGCGGa- -3'
miRNA:   3'- gCUUCCGCUCgCG----UAC--CCGCUGCUac -5'
32827 3' -57 NC_007346.1 + 198378 0.7 0.881979
Target:  5'- uGGAGGCGAugGUgGUggGGGUGAUGGUGg -3'
miRNA:   3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198120 0.7 0.881979
Target:  5'- uGGAGGUGAugGUgGUggGGGCGAUGGUGg -3'
miRNA:   3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198288 0.7 0.881979
Target:  5'- uGGAGGUGAugGUgGUggGGGCGAUGGUGg -3'
miRNA:   3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.