miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32827 3' -57 NC_007346.1 + 238467 1.09 0.006789
Target:  5'- gCGAAGGCGAGCGCAUGGGCGACGAUGg -3'
miRNA:   3'- -GCUUCCGCUCGCGUACCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198628 0.68 0.953605
Target:  5'- gCGggGGUGAugGUgGUggGGGUGAUGGUGg -3'
miRNA:   3'- -GCuuCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 165568 0.7 0.888413
Target:  5'- gCGAAGGUG-GCgGCGauGGCGAUGGUGg -3'
miRNA:   3'- -GCUUCCGCuCG-CGUacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198495 0.7 0.881979
Target:  5'- uGGAGGUGAugGUgGUggGGGCGAUGGUGg -3'
miRNA:   3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198288 0.7 0.881979
Target:  5'- uGGAGGUGAugGUgGUggGGGCGAUGGUGg -3'
miRNA:   3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198120 0.7 0.881979
Target:  5'- uGGAGGUGAugGUgGUggGGGCGAUGGUGg -3'
miRNA:   3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198830 0.66 0.979066
Target:  5'- aGAuGGUG-GCGguUGagauggcGGCGGCGAUGg -3'
miRNA:   3'- gCUuCCGCuCGCguAC-------CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 274531 0.66 0.977116
Target:  5'- aCGggGGUGAcggacgcgacggGCaGCAUGGGCaccGCGAg- -3'
miRNA:   3'- -GCuuCCGCU------------CG-CGUACCCGc--UGCUac -5'
32827 3' -57 NC_007346.1 + 198778 0.67 0.966815
Target:  5'- gCGggGGUGAugGUG-GUGGG-GGCGAUGg -3'
miRNA:   3'- -GCuuCCGCU--CGCgUACCCgCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 59714 0.68 0.949817
Target:  5'- aGGAGGUG-GUGaugGcGGCGGCGGUGg -3'
miRNA:   3'- gCUUCCGCuCGCguaC-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 198378 0.7 0.881979
Target:  5'- uGGAGGCGAugGUgGUggGGGUGAUGGUGg -3'
miRNA:   3'- gCUUCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 57505 0.72 0.807836
Target:  5'- gGGAGGUG-GCGaggGaGGCGGCGAUGg -3'
miRNA:   3'- gCUUCCGCuCGCguaC-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 197895 0.67 0.969651
Target:  5'- uGGAGGCGAuggugGCGau--GGUGGCGGUGg -3'
miRNA:   3'- gCUUCCGCU-----CGCguacCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 165598 0.71 0.839491
Target:  5'- aCGAAGGUGgcGGCGaugGuGGUGGCGAUGg -3'
miRNA:   3'- -GCUUCCGC--UCGCguaC-CCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 61187 0.68 0.941637
Target:  5'- gCGAAGGCGgagguGGCGCcggugauggcgGUGGGCugGGCGGa- -3'
miRNA:   3'- -GCUUCCGC-----UCGCG-----------UACCCG--CUGCUac -5'
32827 3' -57 NC_007346.1 + 58044 0.66 0.974796
Target:  5'- aGGAGGUgGAGCGgGUGGuggguucgguGaCGGCGGUGg -3'
miRNA:   3'- gCUUCCG-CUCGCgUACC----------C-GCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 58145 0.66 0.983134
Target:  5'- aCGGAGGUGGGgGagaugGUGGGgGA-GAUGg -3'
miRNA:   3'- -GCUUCCGCUCgCg----UACCCgCUgCUAC- -5'
32827 3' -57 NC_007346.1 + 198673 0.7 0.875353
Target:  5'- gCGggGGUGAugGUgGCggGGGUGAUGGUGg -3'
miRNA:   3'- -GCuuCCGCU--CG-CGuaCCCGCUGCUAC- -5'
32827 3' -57 NC_007346.1 + 50012 0.67 0.957196
Target:  5'- gCGAuGGCGAG-GCGgauUGuGGCGACGcUGg -3'
miRNA:   3'- -GCUuCCGCUCgCGU---AC-CCGCUGCuAC- -5'
32827 3' -57 NC_007346.1 + 128548 0.68 0.937241
Target:  5'- uGAuGGCGA-UGCAgauGGCGGCGGUGg -3'
miRNA:   3'- gCUuCCGCUcGCGUac-CCGCUGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.