Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32829 | 3' | -53.5 | NC_007346.1 | + | 243080 | 0.66 | 0.998747 |
Target: 5'- aCCGA-GACGA--UGCAgCGcCACGUCAa -3' miRNA: 3'- -GGCUaCUGCUcuACGU-GCuGUGCGGU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 273956 | 0.66 | 0.99851 |
Target: 5'- aCCGcgGAUGAGuUGUACcaACGCGCgCAu -3' miRNA: 3'- -GGCuaCUGCUCuACGUGc-UGUGCG-GU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 86375 | 0.66 | 0.99851 |
Target: 5'- aCGuuguugGACGAGAccUGCugGAggUGCGCCu -3' miRNA: 3'- gGCua----CUGCUCU--ACGugCU--GUGCGGu -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 253144 | 0.66 | 0.998484 |
Target: 5'- aCCGGUGGCGAGuUGUggaguugGCuGAUGCGuCCGa -3' miRNA: 3'- -GGCUACUGCUCuACG-------UG-CUGUGC-GGU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 200475 | 0.66 | 0.998206 |
Target: 5'- uUGAUGugGccagauuggcGGAUGUgauggaggagacgAUGGCGCGCCAa -3' miRNA: 3'- gGCUACugC----------UCUACG-------------UGCUGUGCGGU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 33441 | 0.66 | 0.997921 |
Target: 5'- gUCGGUGAUGAuGUGUAUGAUAUGauCCAa -3' miRNA: 3'- -GGCUACUGCUcUACGUGCUGUGC--GGU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 257350 | 0.66 | 0.997887 |
Target: 5'- cCCGGcuuUGAucacugcgccaauCGGGAUGCGCGuguCACGCg- -3' miRNA: 3'- -GGCU---ACU-------------GCUCUACGUGCu--GUGCGgu -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 256763 | 0.67 | 0.99756 |
Target: 5'- aCUGGUGGCGAGuUGCGgaguuggcUGAUGCGaCCGa -3' miRNA: 3'- -GGCUACUGCUCuACGU--------GCUGUGC-GGU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 274625 | 0.67 | 0.99756 |
Target: 5'- -aGAUGugGAguuucuGAUGCguuGCGAUGCGCUg -3' miRNA: 3'- ggCUACugCU------CUACG---UGCUGUGCGGu -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 53697 | 0.67 | 0.99756 |
Target: 5'- uCCGAUGAaaguauucGGGUGUACGAUacauGCGCUg -3' miRNA: 3'- -GGCUACUgc------UCUACGUGCUG----UGCGGu -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 262621 | 0.67 | 0.99756 |
Target: 5'- aCUGGUGGCGAGuUGCGgaguuggcUGAUGCGuCCGa -3' miRNA: 3'- -GGCUACUGCUCuACGU--------GCUGUGC-GGU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 249621 | 0.67 | 0.99756 |
Target: 5'- aCCGGUGGCGAGuuguggguUGguUGACGUGuCCAa -3' miRNA: 3'- -GGCUACUGCUCu-------ACguGCUGUGC-GGU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 256020 | 0.67 | 0.997148 |
Target: 5'- cCCGAgauUGAgGAGGcggUGCGCGAUGCGaCGa -3' miRNA: 3'- -GGCU---ACUgCUCU---ACGUGCUGUGCgGU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 91369 | 0.67 | 0.996151 |
Target: 5'- uUCGAcaUGugGGGAaGU--GACACGCCAa -3' miRNA: 3'- -GGCU--ACugCUCUaCGugCUGUGCGGU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 372534 | 0.67 | 0.995555 |
Target: 5'- uUGGUGuauuaaucuuACGAGAUGCACcuaGCGuCGCCAu -3' miRNA: 3'- gGCUAC----------UGCUCUACGUGc--UGU-GCGGU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 207854 | 0.68 | 0.994135 |
Target: 5'- aUGAcauUGAUGAaAUGCAgCGGCGCGCUAc -3' miRNA: 3'- gGCU---ACUGCUcUACGU-GCUGUGCGGU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 262561 | 0.68 | 0.991343 |
Target: 5'- uUGGaGACGAGAcccGUGCGACGCGCg- -3' miRNA: 3'- gGCUaCUGCUCUa--CGUGCUGUGCGgu -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 236905 | 0.68 | 0.990209 |
Target: 5'- cCCGGUGACaucugcGAUGCACagGGCAUugGCCAg -3' miRNA: 3'- -GGCUACUGcu----CUACGUG--CUGUG--CGGU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 257783 | 0.68 | 0.990209 |
Target: 5'- cCCGAuUGGCGcagugaucaaAGccGgGCGGCACGCCGg -3' miRNA: 3'- -GGCU-ACUGC----------UCuaCgUGCUGUGCGGU- -5' |
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32829 | 3' | -53.5 | NC_007346.1 | + | 224298 | 0.69 | 0.988962 |
Target: 5'- uCUGAgaggGACGAGAUuCGCGA-ACGCCu -3' miRNA: 3'- -GGCUa---CUGCUCUAcGUGCUgUGCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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