miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32831 3' -46.9 NC_007346.1 + 323647 0.66 1
Target:  5'- ---cAACGCCGUCGccGaUUCAuUCUCc -3'
miRNA:   3'- gauuUUGCGGCAGCcaC-AAGUuAGAG- -5'
32831 3' -46.9 NC_007346.1 + 314895 0.66 1
Target:  5'- ----cGCGaCCGUCGGUGUcaaauacgUAGUCUg -3'
miRNA:   3'- gauuuUGC-GGCAGCCACAa-------GUUAGAg -5'
32831 3' -46.9 NC_007346.1 + 304954 0.66 1
Target:  5'- aUAcGACcCCGUaUGGUGgggcgUCGAUCUCg -3'
miRNA:   3'- gAUuUUGcGGCA-GCCACa----AGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 275385 0.68 0.999996
Target:  5'- aUGAGACGCCGUguugUGGUGgcgggCAAUUa- -3'
miRNA:   3'- gAUUUUGCGGCA----GCCACaa---GUUAGag -5'
32831 3' -46.9 NC_007346.1 + 275343 0.66 1
Target:  5'- gUGAGACGCCGcCGG-GUUUGAa--- -3'
miRNA:   3'- gAUUUUGCGGCaGCCaCAAGUUagag -5'
32831 3' -46.9 NC_007346.1 + 269965 0.74 0.996166
Target:  5'- -----gUGuuGUCGGUGUugUCGGUCUCg -3'
miRNA:   3'- gauuuuGCggCAGCCACA--AGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 265202 0.66 1
Target:  5'- ---cGACGCgGUCGGcGUgUCGAUCa- -3'
miRNA:   3'- gauuUUGCGgCAGCCaCA-AGUUAGag -5'
32831 3' -46.9 NC_007346.1 + 265141 0.67 0.999999
Target:  5'- ----cACGUCgGUCGGUGUgaaCAgcGUCUCg -3'
miRNA:   3'- gauuuUGCGG-CAGCCACAa--GU--UAGAG- -5'
32831 3' -46.9 NC_007346.1 + 263628 0.89 0.528255
Target:  5'- cCUAAAACGCCGUCGGguUUUAAUCUCg -3'
miRNA:   3'- -GAUUUUGCGGCAGCCacAAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 260640 0.74 0.996166
Target:  5'- cCUAAAACGCCGUCGGUaUUCc----- -3'
miRNA:   3'- -GAUUUUGCGGCAGCCAcAAGuuagag -5'
32831 3' -46.9 NC_007346.1 + 259180 0.69 0.999965
Target:  5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3'
miRNA:   3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 259043 0.69 0.999965
Target:  5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3'
miRNA:   3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 258273 0.69 0.999965
Target:  5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3'
miRNA:   3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 257666 0.69 0.999965
Target:  5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3'
miRNA:   3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 256928 0.69 0.999965
Target:  5'- -aGAAucCGCCGUCGGgaUUCuAUCUCg -3'
miRNA:   3'- gaUUUu-GCGGCAGCCacAAGuUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 256054 0.98 0.224298
Target:  5'- cCUAAAACGCCGUUGGcGUUCAAUCUCg -3'
miRNA:   3'- -GAUUUUGCGGCAGCCaCAAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 255098 1.12 0.037606
Target:  5'- cCUAAAACGCCGUCGGUGUUCAAUCUCg -3'
miRNA:   3'- -GAUUUUGCGGCAGCCACAAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 254841 0.78 0.965708
Target:  5'- --cAGACGUCGUCGGcaUUCGAUCUCg -3'
miRNA:   3'- gauUUUGCGGCAGCCacAAGUUAGAG- -5'
32831 3' -46.9 NC_007346.1 + 254459 0.66 1
Target:  5'- aCUGAGcCGCCGUUGGUugGUUUu-UUUCa -3'
miRNA:   3'- -GAUUUuGCGGCAGCCA--CAAGuuAGAG- -5'
32831 3' -46.9 NC_007346.1 + 253987 1.12 0.037606
Target:  5'- cCUAAAACGCCGUCGGUGUUCAAUCUCg -3'
miRNA:   3'- -GAUUUUGCGGCAGCCACAAGUUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.