miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32831 5' -47.8 NC_007346.1 + 349822 0.69 0.999842
Target:  5'- gGUGGAcuugguGGugGCGaCGACGGCGGCg -3'
miRNA:   3'- -CACUUuu----UUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 304867 0.69 0.999842
Target:  5'- -cGu--AAGAC-CACCGugGGCGGUa -3'
miRNA:   3'- caCuuuUUUUGuGUGGUugCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 314824 0.69 0.999842
Target:  5'- -aGAAGAAAugGCAaCGAauGCGGCUa -3'
miRNA:   3'- caCUUUUUUugUGUgGUUgcCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 238249 0.69 0.999799
Target:  5'- cGUGucgguGACugG-CGACGGCGGCUc -3'
miRNA:   3'- -CACuuuuuUUGugUgGUUGCCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 243208 0.69 0.999799
Target:  5'- -gGAAAGAAAUACGCCGAgcacGCGGUa -3'
miRNA:   3'- caCUUUUUUUGUGUGGUUgc--CGCCGa -5'
32831 5' -47.8 NC_007346.1 + 61135 0.7 0.999746
Target:  5'- gGUGGu--GAugGCGCCGgugAUGGCGGUg -3'
miRNA:   3'- -CACUuuuUUugUGUGGU---UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 310212 0.7 0.999746
Target:  5'- gGUGGAGGAG--AUugCGAUGGUGGCa -3'
miRNA:   3'- -CACUUUUUUugUGugGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 128688 0.7 0.999602
Target:  5'- gGUGAAcguAACGaccuGCCgAACGGCGGCg -3'
miRNA:   3'- -CACUUuuuUUGUg---UGG-UUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 310125 0.7 0.999506
Target:  5'- gGUGAAGGcAGugGCGgaGAUGGCGGCg -3'
miRNA:   3'- -CACUUUU-UUugUGUggUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 149946 0.7 0.999506
Target:  5'- gGUGAGc--AACAUACCGcuucgcCGGCGGCa -3'
miRNA:   3'- -CACUUuuuUUGUGUGGUu-----GCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 261869 0.7 0.999391
Target:  5'- -aGGAAc-AACGCACCGGCaGCGGUg -3'
miRNA:   3'- caCUUUuuUUGUGUGGUUGcCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 188093 0.7 0.999378
Target:  5'- gGUGGAGGAggUgagggcgGCGgCGugGGCGGCg -3'
miRNA:   3'- -CACUUUUUuuG-------UGUgGUugCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 266568 0.71 0.999253
Target:  5'- -cGAAAGGcACACugCAGgcagugUGGCGGCUc -3'
miRNA:   3'- caCUUUUUuUGUGugGUU------GCCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 26970 0.71 0.998896
Target:  5'- -aGAAGAAGuCGCACgAGCGGCuGCa -3'
miRNA:   3'- caCUUUUUUuGUGUGgUUGCCGcCGa -5'
32831 5' -47.8 NC_007346.1 + 138165 0.71 0.998668
Target:  5'- -gGAccGGGGCGCACgAGCGGCGGa- -3'
miRNA:   3'- caCUuuUUUUGUGUGgUUGCCGCCga -5'
32831 5' -47.8 NC_007346.1 + 307925 0.72 0.998058
Target:  5'- gGUGGAGAugGCgguggggGCACCGGCGGUGGa- -3'
miRNA:   3'- -CACUUUUuuUG-------UGUGGUUGCCGCCga -5'
32831 5' -47.8 NC_007346.1 + 308725 0.72 0.998058
Target:  5'- gGUGGAGAugGCgguggggGCACCGGCGGUGGa- -3'
miRNA:   3'- -CACUUUUuuUG-------UGUGGUUGCCGCCga -5'
32831 5' -47.8 NC_007346.1 + 84017 0.72 0.997733
Target:  5'- cUGAGAAuuagucAUACACUAACGGUGGUc -3'
miRNA:   3'- cACUUUUuu----UGUGUGGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 188051 0.72 0.997733
Target:  5'- gGUGAG--GGugGCGgCGugGGCGGCg -3'
miRNA:   3'- -CACUUuuUUugUGUgGUugCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 128526 0.73 0.995687
Target:  5'- gGUGGAGuugguGAUGCAgaCGACGGCGGCg -3'
miRNA:   3'- -CACUUUuu---UUGUGUg-GUUGCCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.