miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32831 5' -47.8 NC_007346.1 + 57440 0.67 0.999987
Target:  5'- -gGggGAAAugGCGgCGgcaauaACGGCGGUg -3'
miRNA:   3'- caCuuUUUUugUGUgGU------UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 128210 0.67 0.999987
Target:  5'- aUGGcggcGGAGAugGCGgUGACGGCGGUg -3'
miRNA:   3'- cACU----UUUUUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 59718 0.68 0.999976
Target:  5'- gGUGGu--GAugGCGgCGGCGGUGGUg -3'
miRNA:   3'- -CACUuuuUUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 311462 0.68 0.999976
Target:  5'- gGUGGAGGAG--GCACCggUGGUGGa- -3'
miRNA:   3'- -CACUUUUUUugUGUGGuuGCCGCCga -5'
32831 5' -47.8 NC_007346.1 + 266783 0.68 0.999968
Target:  5'- ---cAAAAGGCACAaugcagaCAguGCGGCGGCUc -3'
miRNA:   3'- cacuUUUUUUGUGUg------GU--UGCCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 50558 0.68 0.999968
Target:  5'- -aGAAGAAGACAucggucCACCGgaAUGGCGaGCa -3'
miRNA:   3'- caCUUUUUUUGU------GUGGU--UGCCGC-CGa -5'
32831 5' -47.8 NC_007346.1 + 401592 0.68 0.999968
Target:  5'- aGUGAAGAAGuauCugGCCGugcaGGUGGUUg -3'
miRNA:   3'- -CACUUUUUUu--GugUGGUug--CCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 380772 0.68 0.999957
Target:  5'- aGUGAGGAu-GCaACAaaAGCGGCGGUg -3'
miRNA:   3'- -CACUUUUuuUG-UGUggUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 61188 0.68 0.999957
Target:  5'- -cGAAggcgGAGGugGCGCCGgugAUGGCGGUg -3'
miRNA:   3'- caCUU----UUUUugUGUGGU---UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 311755 0.68 0.999944
Target:  5'- gGUGGAGAuggcGGugGCGgUAAUGGCGGUg -3'
miRNA:   3'- -CACUUUU----UUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 200663 0.69 0.999926
Target:  5'- gGUGAucguGGGgGCAUUGGCGGUGGCg -3'
miRNA:   3'- -CACUuuu-UUUgUGUGGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 171310 0.69 0.999926
Target:  5'- -cGAcuu-GACAUACCGGCGGCaGCc -3'
miRNA:   3'- caCUuuuuUUGUGUGGUUGCCGcCGa -5'
32831 5' -47.8 NC_007346.1 + 339554 0.69 0.999926
Target:  5'- ---cAGGAGACAUACCcagugauauCGGCGGCg -3'
miRNA:   3'- cacuUUUUUUGUGUGGuu-------GCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 239292 0.69 0.999904
Target:  5'- -cGGAGAuuGCggcaaagugguAUGCCGACGGCGGUc -3'
miRNA:   3'- caCUUUUuuUG-----------UGUGGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 198842 0.69 0.999904
Target:  5'- uUGAGAu-GGCgGCGgCGAUGGCGGCg -3'
miRNA:   3'- cACUUUuuUUG-UGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 249000 0.69 0.999902
Target:  5'- uUGAGAAAcucGACgaugguuGCGgUAACGGCGGCg -3'
miRNA:   3'- cACUUUUU---UUG-------UGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 57404 0.69 0.999877
Target:  5'- -gGAGGGAAACugGgUAAUGGUGGUg -3'
miRNA:   3'- caCUUUUUUUGugUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 335742 0.69 0.999877
Target:  5'- -gGAAuAAAACAUAgaaCAGCGGgGGCUu -3'
miRNA:   3'- caCUUuUUUUGUGUg--GUUGCCgCCGA- -5'
32831 5' -47.8 NC_007346.1 + 308668 0.69 0.999877
Target:  5'- gGUGGAGGAGAU--GgUGGCGGCGGCa -3'
miRNA:   3'- -CACUUUUUUUGugUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 238940 0.69 0.999877
Target:  5'- cUGGGAuGAugACgaGCUGAUGGCGGCg -3'
miRNA:   3'- cACUUUuUUugUG--UGGUUGCCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.