miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32831 5' -47.8 NC_007346.1 + 165591 0.66 0.999997
Target:  5'- gGUGGcgacGAAGGugGCGgCGAUGGUGGUg -3'
miRNA:   3'- -CACU----UUUUUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 171310 0.69 0.999926
Target:  5'- -cGAcuu-GACAUACCGGCGGCaGCc -3'
miRNA:   3'- caCUuuuuUUGUGUGGUUGCCGcCGa -5'
32831 5' -47.8 NC_007346.1 + 188000 0.67 0.999991
Target:  5'- gGUGggGGcGACGgcggaugaGgCGACGGCGGCg -3'
miRNA:   3'- -CACuuUUuUUGUg-------UgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 188051 0.72 0.997733
Target:  5'- gGUGAG--GGugGCGgCGugGGCGGCg -3'
miRNA:   3'- -CACUUuuUUugUGUgGUugCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 188093 0.7 0.999378
Target:  5'- gGUGGAGGAggUgagggcgGCGgCGugGGCGGCg -3'
miRNA:   3'- -CACUUUUUuuG-------UGUgGUugCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 189448 0.67 0.999991
Target:  5'- gGUGAcgguGGugGCGgCGACGGUGGUg -3'
miRNA:   3'- -CACUuuu-UUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 197635 0.66 0.999998
Target:  5'- uGUGAugguGGugGCGauGGCGGCGGCg -3'
miRNA:   3'- -CACUuuu-UUugUGUggUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 198842 0.69 0.999904
Target:  5'- uUGAGAu-GGCgGCGgCGAUGGCGGCg -3'
miRNA:   3'- cACUUUuuUUG-UGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 200663 0.69 0.999926
Target:  5'- gGUGAucguGGGgGCAUUGGCGGUGGCg -3'
miRNA:   3'- -CACUuuu-UUUgUGUGGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 202377 0.66 0.999999
Target:  5'- aUGAGAuuGAACACAuccuucCCGACacuGGUGGCa -3'
miRNA:   3'- cACUUUu-UUUGUGU------GGUUG---CCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 221569 0.76 0.969324
Target:  5'- ------cGggUGCGCCAACGGCGGCa -3'
miRNA:   3'- cacuuuuUuuGUGUGGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 238249 0.69 0.999799
Target:  5'- cGUGucgguGACugG-CGACGGCGGCUc -3'
miRNA:   3'- -CACuuuuuUUGugUgGUUGCCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 238940 0.69 0.999877
Target:  5'- cUGGGAuGAugACgaGCUGAUGGCGGCg -3'
miRNA:   3'- cACUUUuUUugUG--UGGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 239292 0.69 0.999904
Target:  5'- -cGGAGAuuGCggcaaagugguAUGCCGACGGCGGUc -3'
miRNA:   3'- caCUUUUuuUG-----------UGUGGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 239573 0.66 0.999997
Target:  5'- uUGAGcaacuuGGAUGCaACCGcgGCGGCGGCg -3'
miRNA:   3'- cACUUuu----UUUGUG-UGGU--UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 240962 0.66 0.999999
Target:  5'- -cGAGAuuucacuaauuAAGACACucgACUuuaaGACGGCGGCa -3'
miRNA:   3'- caCUUU-----------UUUUGUG---UGG----UUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 243208 0.69 0.999799
Target:  5'- -gGAAAGAAAUACGCCGAgcacGCGGUa -3'
miRNA:   3'- caCUUUUUUUGUGUGGUUgc--CGCCGa -5'
32831 5' -47.8 NC_007346.1 + 249000 0.69 0.999902
Target:  5'- uUGAGAAAcucGACgaugguuGCGgUAACGGCGGCg -3'
miRNA:   3'- cACUUUUU---UUG-------UGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 254022 0.9 0.406724
Target:  5'- gGUGAAAAAAACcaACCAACGGCGGCUc -3'
miRNA:   3'- -CACUUUUUUUGugUGGUUGCCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 255689 0.78 0.933478
Target:  5'- -aGGAGGAGGCaAUugCGGCGGCGGCc -3'
miRNA:   3'- caCUUUUUUUG-UGugGUUGCCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.