miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32831 5' -47.8 NC_007346.1 + 372489 0.66 0.999999
Target:  5'- uUGGAuGAAGCAUACguGgucCGGCGGUg -3'
miRNA:   3'- cACUUuUUUUGUGUGguU---GCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 59718 0.68 0.999976
Target:  5'- gGUGGu--GAugGCGgCGGCGGUGGUg -3'
miRNA:   3'- -CACUuuuUUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 26970 0.71 0.998896
Target:  5'- -aGAAGAAGuCGCACgAGCGGCuGCa -3'
miRNA:   3'- caCUUUUUUuGUGUGgUUGCCGcCGa -5'
32831 5' -47.8 NC_007346.1 + 197635 0.66 0.999998
Target:  5'- uGUGAugguGGugGCGauGGCGGCGGCg -3'
miRNA:   3'- -CACUuuu-UUugUGUggUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 134798 0.66 0.999999
Target:  5'- aUGAGAgcaGAAAgGCGgCGAagaaGGCGGCa -3'
miRNA:   3'- cACUUU---UUUUgUGUgGUUg---CCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 58162 0.66 0.999999
Target:  5'- gGUGggGGAGAU-----GGCGGCGGCg -3'
miRNA:   3'- -CACuuUUUUUGuguggUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 133246 0.75 0.981797
Target:  5'- -cGAAcgGGAAGCGCACCAACGGUG-Ca -3'
miRNA:   3'- caCUU--UUUUUGUGUGGUUGCCGCcGa -5'
32831 5' -47.8 NC_007346.1 + 254022 0.9 0.406724
Target:  5'- gGUGAAAAAAACcaACCAACGGCGGCUc -3'
miRNA:   3'- -CACUUUUUUUGugUGGUUGCCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 61135 0.7 0.999746
Target:  5'- gGUGGu--GAugGCGCCGgugAUGGCGGUg -3'
miRNA:   3'- -CACUuuuUUugUGUGGU---UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 57440 0.67 0.999987
Target:  5'- -gGggGAAAugGCGgCGgcaauaACGGCGGUg -3'
miRNA:   3'- caCuuUUUUugUGUgGU------UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 189448 0.67 0.999991
Target:  5'- gGUGAcgguGGugGCGgCGACGGUGGUg -3'
miRNA:   3'- -CACUuuu-UUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 84017 0.72 0.997733
Target:  5'- cUGAGAAuuagucAUACACUAACGGUGGUc -3'
miRNA:   3'- cACUUUUuu----UGUGUGGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 171310 0.69 0.999926
Target:  5'- -cGAcuu-GACAUACCGGCGGCaGCc -3'
miRNA:   3'- caCUuuuuUUGUGUGGUUGCCGcCGa -5'
32831 5' -47.8 NC_007346.1 + 311755 0.68 0.999944
Target:  5'- gGUGGAGAuggcGGugGCGgUAAUGGCGGUg -3'
miRNA:   3'- -CACUUUU----UUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 401592 0.68 0.999968
Target:  5'- aGUGAAGAAGuauCugGCCGugcaGGUGGUUg -3'
miRNA:   3'- -CACUUUUUUu--GugUGGUug--CCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 188093 0.7 0.999378
Target:  5'- gGUGGAGGAggUgagggcgGCGgCGugGGCGGCg -3'
miRNA:   3'- -CACUUUUUuuG-------UGUgGUugCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 266568 0.71 0.999253
Target:  5'- -cGAAAGGcACACugCAGgcagugUGGCGGCUc -3'
miRNA:   3'- caCUUUUUuUGUGugGUU------GCCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 138165 0.71 0.998668
Target:  5'- -gGAccGGGGCGCACgAGCGGCGGa- -3'
miRNA:   3'- caCUuuUUUUGUGUGgUUGCCGCCga -5'
32831 5' -47.8 NC_007346.1 + 307925 0.72 0.998058
Target:  5'- gGUGGAGAugGCgguggggGCACCGGCGGUGGa- -3'
miRNA:   3'- -CACUUUUuuUG-------UGUGGUUGCCGCCga -5'
32831 5' -47.8 NC_007346.1 + 308725 0.72 0.998058
Target:  5'- gGUGGAGAugGCgguggggGCACCGGCGGUGGa- -3'
miRNA:   3'- -CACUUUUuuUG-------UGUGGUUGCCGCCga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.