miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32831 5' -47.8 NC_007346.1 + 254022 0.9 0.406724
Target:  5'- gGUGAAAAAAACcaACCAACGGCGGCUc -3'
miRNA:   3'- -CACUUUUUUUGugUGGUUGCCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 59718 0.68 0.999976
Target:  5'- gGUGGu--GAugGCGgCGGCGGUGGUg -3'
miRNA:   3'- -CACUuuuUUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 137141 0.67 0.999991
Target:  5'- -aGAAGuaccAUAUACCGACGGCacaGGCg -3'
miRNA:   3'- caCUUUuuu-UGUGUGGUUGCCG---CCGa -5'
32831 5' -47.8 NC_007346.1 + 371059 0.66 0.999999
Target:  5'- uUGGAGAGAaccaucuccauuaGCAUACCAAUGGUcaugcgugaugggauGGCa -3'
miRNA:   3'- cACUUUUUU-------------UGUGUGGUUGCCG---------------CCGa -5'
32831 5' -47.8 NC_007346.1 + 61135 0.7 0.999746
Target:  5'- gGUGGu--GAugGCGCCGgugAUGGCGGUg -3'
miRNA:   3'- -CACUuuuUUugUGUGGU---UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 238249 0.69 0.999799
Target:  5'- cGUGucgguGACugG-CGACGGCGGCUc -3'
miRNA:   3'- -CACuuuuuUUGugUgGUUGCCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 304867 0.69 0.999842
Target:  5'- -cGu--AAGAC-CACCGugGGCGGUa -3'
miRNA:   3'- caCuuuUUUUGuGUGGUugCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 314824 0.69 0.999842
Target:  5'- -aGAAGAAAugGCAaCGAauGCGGCUa -3'
miRNA:   3'- caCUUUUUUugUGUgGUUgcCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 239292 0.69 0.999904
Target:  5'- -cGGAGAuuGCggcaaagugguAUGCCGACGGCGGUc -3'
miRNA:   3'- caCUUUUuuUG-----------UGUGGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 50558 0.68 0.999968
Target:  5'- -aGAAGAAGACAucggucCACCGgaAUGGCGaGCa -3'
miRNA:   3'- caCUUUUUUUGU------GUGGU--UGCCGC-CGa -5'
32831 5' -47.8 NC_007346.1 + 339554 0.69 0.999926
Target:  5'- ---cAGGAGACAUACCcagugauauCGGCGGCg -3'
miRNA:   3'- cacuUUUUUUGUGUGGuu-------GCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 249000 0.69 0.999902
Target:  5'- uUGAGAAAcucGACgaugguuGCGgUAACGGCGGCg -3'
miRNA:   3'- cACUUUUU---UUG-------UGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 133246 0.75 0.981797
Target:  5'- -cGAAcgGGAAGCGCACCAACGGUG-Ca -3'
miRNA:   3'- caCUU--UUUUUGUGUGGUUGCCGCcGa -5'
32831 5' -47.8 NC_007346.1 + 380772 0.68 0.999957
Target:  5'- aGUGAGGAu-GCaACAaaAGCGGCGGUg -3'
miRNA:   3'- -CACUUUUuuUG-UGUggUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 26970 0.71 0.998896
Target:  5'- -aGAAGAAGuCGCACgAGCGGCuGCa -3'
miRNA:   3'- caCUUUUUUuGUGUGgUUGCCGcCGa -5'
32831 5' -47.8 NC_007346.1 + 57404 0.69 0.999877
Target:  5'- -gGAGGGAAACugGgUAAUGGUGGUg -3'
miRNA:   3'- caCUUUUUUUGugUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 61188 0.68 0.999957
Target:  5'- -cGAAggcgGAGGugGCGCCGgugAUGGCGGUg -3'
miRNA:   3'- caCUU----UUUUugUGUGGU---UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 57440 0.67 0.999987
Target:  5'- -gGggGAAAugGCGgCGgcaauaACGGCGGUg -3'
miRNA:   3'- caCuuUUUUugUGUgGU------UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 261869 0.7 0.999391
Target:  5'- -aGGAAc-AACGCACCGGCaGCGGUg -3'
miRNA:   3'- caCUUUuuUUGUGUGGUUGcCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 243208 0.69 0.999799
Target:  5'- -gGAAAGAAAUACGCCGAgcacGCGGUa -3'
miRNA:   3'- caCUUUUUUUGUGUGGUUgc--CGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.