miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32831 5' -47.8 NC_007346.1 + 254022 0.9 0.406724
Target:  5'- gGUGAAAAAAACcaACCAACGGCGGCUc -3'
miRNA:   3'- -CACUUUUUUUGugUGGUUGCCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 272488 0.84 0.680423
Target:  5'- -aGAGGAccGACGCACCGGCGGUGGCg -3'
miRNA:   3'- caCUUUUu-UUGUGUGGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 255689 0.78 0.933478
Target:  5'- -aGGAGGAGGCaAUugCGGCGGCGGCc -3'
miRNA:   3'- caCUUUUUUUG-UGugGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 128466 0.77 0.94921
Target:  5'- gGUGAAGcAGAugGCGCCugccaccaugguggaGGCGGCGGCg -3'
miRNA:   3'- -CACUUU-UUUugUGUGG---------------UUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 128415 0.77 0.94921
Target:  5'- gGUGAAGcAGAugGCGCCugccaccaugguggaGGCGGCGGCg -3'
miRNA:   3'- -CACUUU-UUUugUGUGG---------------UUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 221569 0.76 0.969324
Target:  5'- ------cGggUGCGCCAACGGCGGCa -3'
miRNA:   3'- cacuuuuUuuGUGUGGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 133246 0.75 0.981797
Target:  5'- -cGAAcgGGAAGCGCACCAACGGUG-Ca -3'
miRNA:   3'- caCUU--UUUUUGUGUGGUUGCCGCcGa -5'
32831 5' -47.8 NC_007346.1 + 353128 0.74 0.992332
Target:  5'- cGUGAAucGAugGCACC--CGGUGGCa -3'
miRNA:   3'- -CACUUuuUUugUGUGGuuGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 309715 0.74 0.992332
Target:  5'- -gGGAGGcgGCGgGCuCGGCGGCGGCg -3'
miRNA:   3'- caCUUUUuuUGUgUG-GUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 309969 0.73 0.994914
Target:  5'- gGUGGAGAugGCgguggggGCACCggUGGUGGCg -3'
miRNA:   3'- -CACUUUUuuUG-------UGUGGuuGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 307150 0.73 0.994989
Target:  5'- -gGggGGcgGCGgGCuCGGCGGCGGCg -3'
miRNA:   3'- caCuuUUuuUGUgUG-GUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 128526 0.73 0.995687
Target:  5'- gGUGGAGuugguGAUGCAgaCGACGGCGGCg -3'
miRNA:   3'- -CACUUUuu---UUGUGUg-GUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 84017 0.72 0.997733
Target:  5'- cUGAGAAuuagucAUACACUAACGGUGGUc -3'
miRNA:   3'- cACUUUUuu----UGUGUGGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 188051 0.72 0.997733
Target:  5'- gGUGAG--GGugGCGgCGugGGCGGCg -3'
miRNA:   3'- -CACUUuuUUugUGUgGUugCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 308725 0.72 0.998058
Target:  5'- gGUGGAGAugGCgguggggGCACCGGCGGUGGa- -3'
miRNA:   3'- -CACUUUUuuUG-------UGUGGUUGCCGCCga -5'
32831 5' -47.8 NC_007346.1 + 307925 0.72 0.998058
Target:  5'- gGUGGAGAugGCgguggggGCACCGGCGGUGGa- -3'
miRNA:   3'- -CACUUUUuuUG-------UGUGGUUGCCGCCga -5'
32831 5' -47.8 NC_007346.1 + 138165 0.71 0.998668
Target:  5'- -gGAccGGGGCGCACgAGCGGCGGa- -3'
miRNA:   3'- caCUuuUUUUGUGUGgUUGCCGCCga -5'
32831 5' -47.8 NC_007346.1 + 26970 0.71 0.998896
Target:  5'- -aGAAGAAGuCGCACgAGCGGCuGCa -3'
miRNA:   3'- caCUUUUUUuGUGUGgUUGCCGcCGa -5'
32831 5' -47.8 NC_007346.1 + 266568 0.71 0.999253
Target:  5'- -cGAAAGGcACACugCAGgcagugUGGCGGCUc -3'
miRNA:   3'- caCUUUUUuUGUGugGUU------GCCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 188093 0.7 0.999378
Target:  5'- gGUGGAGGAggUgagggcgGCGgCGugGGCGGCg -3'
miRNA:   3'- -CACUUUUUuuG-------UGUgGUugCCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.