miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32831 5' -47.8 NC_007346.1 + 26970 0.71 0.998896
Target:  5'- -aGAAGAAGuCGCACgAGCGGCuGCa -3'
miRNA:   3'- caCUUUUUUuGUGUGgUUGCCGcCGa -5'
32831 5' -47.8 NC_007346.1 + 50558 0.68 0.999968
Target:  5'- -aGAAGAAGACAucggucCACCGgaAUGGCGaGCa -3'
miRNA:   3'- caCUUUUUUUGU------GUGGU--UGCCGC-CGa -5'
32831 5' -47.8 NC_007346.1 + 57404 0.69 0.999877
Target:  5'- -gGAGGGAAACugGgUAAUGGUGGUg -3'
miRNA:   3'- caCUUUUUUUGugUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 57440 0.67 0.999987
Target:  5'- -gGggGAAAugGCGgCGgcaauaACGGCGGUg -3'
miRNA:   3'- caCuuUUUUugUGUgGU------UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 58162 0.66 0.999999
Target:  5'- gGUGggGGAGAU-----GGCGGCGGCg -3'
miRNA:   3'- -CACuuUUUUUGuguggUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 59718 0.68 0.999976
Target:  5'- gGUGGu--GAugGCGgCGGCGGUGGUg -3'
miRNA:   3'- -CACUuuuUUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 61135 0.7 0.999746
Target:  5'- gGUGGu--GAugGCGCCGgugAUGGCGGUg -3'
miRNA:   3'- -CACUuuuUUugUGUGGU---UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 61188 0.68 0.999957
Target:  5'- -cGAAggcgGAGGugGCGCCGgugAUGGCGGUg -3'
miRNA:   3'- caCUU----UUUUugUGUGGU---UGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 84017 0.72 0.997733
Target:  5'- cUGAGAAuuagucAUACACUAACGGUGGUc -3'
miRNA:   3'- cACUUUUuu----UGUGUGGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 128210 0.67 0.999987
Target:  5'- aUGGcggcGGAGAugGCGgUGACGGCGGUg -3'
miRNA:   3'- cACU----UUUUUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 128415 0.77 0.94921
Target:  5'- gGUGAAGcAGAugGCGCCugccaccaugguggaGGCGGCGGCg -3'
miRNA:   3'- -CACUUU-UUUugUGUGG---------------UUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 128466 0.77 0.94921
Target:  5'- gGUGAAGcAGAugGCGCCugccaccaugguggaGGCGGCGGCg -3'
miRNA:   3'- -CACUUU-UUUugUGUGG---------------UUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 128526 0.73 0.995687
Target:  5'- gGUGGAGuugguGAUGCAgaCGACGGCGGCg -3'
miRNA:   3'- -CACUUUuu---UUGUGUg-GUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 128688 0.7 0.999602
Target:  5'- gGUGAAcguAACGaccuGCCgAACGGCGGCg -3'
miRNA:   3'- -CACUUuuuUUGUg---UGG-UUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 133246 0.75 0.981797
Target:  5'- -cGAAcgGGAAGCGCACCAACGGUG-Ca -3'
miRNA:   3'- caCUU--UUUUUGUGUGGUUGCCGCcGa -5'
32831 5' -47.8 NC_007346.1 + 134798 0.66 0.999999
Target:  5'- aUGAGAgcaGAAAgGCGgCGAagaaGGCGGCa -3'
miRNA:   3'- cACUUU---UUUUgUGUgGUUg---CCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 137141 0.67 0.999991
Target:  5'- -aGAAGuaccAUAUACCGACGGCacaGGCg -3'
miRNA:   3'- caCUUUuuu-UGUGUGGUUGCCG---CCGa -5'
32831 5' -47.8 NC_007346.1 + 138165 0.71 0.998668
Target:  5'- -gGAccGGGGCGCACgAGCGGCGGa- -3'
miRNA:   3'- caCUuuUUUUGUGUGgUUGCCGCCga -5'
32831 5' -47.8 NC_007346.1 + 149946 0.7 0.999506
Target:  5'- gGUGAGc--AACAUACCGcuucgcCGGCGGCa -3'
miRNA:   3'- -CACUUuuuUUGUGUGGUu-----GCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 163880 0.67 0.999995
Target:  5'- -aGAAGAAGagcaauugucaucGCAUguuGCUgaAGCGGCGGCUg -3'
miRNA:   3'- caCUUUUUU-------------UGUG---UGG--UUGCCGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.