miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32831 5' -47.8 NC_007346.1 + 401592 0.68 0.999968
Target:  5'- aGUGAAGAAGuauCugGCCGugcaGGUGGUUg -3'
miRNA:   3'- -CACUUUUUUu--GugUGGUug--CCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 380772 0.68 0.999957
Target:  5'- aGUGAGGAu-GCaACAaaAGCGGCGGUg -3'
miRNA:   3'- -CACUUUUuuUG-UGUggUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 372489 0.66 0.999999
Target:  5'- uUGGAuGAAGCAUACguGgucCGGCGGUg -3'
miRNA:   3'- cACUUuUUUUGUGUGguU---GCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 371059 0.66 0.999999
Target:  5'- uUGGAGAGAaccaucuccauuaGCAUACCAAUGGUcaugcgugaugggauGGCa -3'
miRNA:   3'- cACUUUUUU-------------UGUGUGGUUGCCG---------------CCGa -5'
32831 5' -47.8 NC_007346.1 + 353128 0.74 0.992332
Target:  5'- cGUGAAucGAugGCACC--CGGUGGCa -3'
miRNA:   3'- -CACUUuuUUugUGUGGuuGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 349822 0.69 0.999842
Target:  5'- gGUGGAcuugguGGugGCGaCGACGGCGGCg -3'
miRNA:   3'- -CACUUuu----UUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 349793 0.67 0.999987
Target:  5'- ------cGGugGCGgCGGCGGCGGCg -3'
miRNA:   3'- cacuuuuUUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 339554 0.69 0.999926
Target:  5'- ---cAGGAGACAUACCcagugauauCGGCGGCg -3'
miRNA:   3'- cacuUUUUUUGUGUGGuu-------GCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 335742 0.69 0.999877
Target:  5'- -gGAAuAAAACAUAgaaCAGCGGgGGCUu -3'
miRNA:   3'- caCUUuUUUUGUGUg--GUUGCCgCCGA- -5'
32831 5' -47.8 NC_007346.1 + 320258 0.67 0.999993
Target:  5'- aGUGAaugacGAAGAACucCAUgAAUGGUGGCa -3'
miRNA:   3'- -CACU-----UUUUUUGu-GUGgUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 314824 0.69 0.999842
Target:  5'- -aGAAGAAAugGCAaCGAauGCGGCUa -3'
miRNA:   3'- caCUUUUUUugUGUgGUUgcCGCCGA- -5'
32831 5' -47.8 NC_007346.1 + 311755 0.68 0.999944
Target:  5'- gGUGGAGAuggcGGugGCGgUAAUGGCGGUg -3'
miRNA:   3'- -CACUUUU----UUugUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 311510 0.66 0.999999
Target:  5'- gGUGGAGuugguGGAgGCGgUAAUGGCGGUg -3'
miRNA:   3'- -CACUUUu----UUUgUGUgGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 311462 0.68 0.999976
Target:  5'- gGUGGAGGAG--GCACCggUGGUGGa- -3'
miRNA:   3'- -CACUUUUUUugUGUGGuuGCCGCCga -5'
32831 5' -47.8 NC_007346.1 + 310275 0.67 0.999995
Target:  5'- gGUGguGGGGGCAa--UGGCGGCGGCg -3'
miRNA:   3'- -CACuuUUUUUGUgugGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 310212 0.7 0.999746
Target:  5'- gGUGGAGGAG--AUugCGAUGGUGGCa -3'
miRNA:   3'- -CACUUUUUUugUGugGUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 310125 0.7 0.999506
Target:  5'- gGUGAAGGcAGugGCGgaGAUGGCGGCg -3'
miRNA:   3'- -CACUUUU-UUugUGUggUUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 309969 0.73 0.994914
Target:  5'- gGUGGAGAugGCgguggggGCACCggUGGUGGCg -3'
miRNA:   3'- -CACUUUUuuUG-------UGUGGuuGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 309888 0.66 0.999999
Target:  5'- -gGAGGAGAugGCGgUggaGAUGGCGGUg -3'
miRNA:   3'- caCUUUUUUugUGUgG---UUGCCGCCGa -5'
32831 5' -47.8 NC_007346.1 + 309715 0.74 0.992332
Target:  5'- -gGGAGGcgGCGgGCuCGGCGGCGGCg -3'
miRNA:   3'- caCUUUUuuUGUgUG-GUUGCCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.