Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32831 | 5' | -47.8 | NC_007346.1 | + | 310275 | 0.67 | 0.999995 |
Target: 5'- gGUGguGGGGGCAa--UGGCGGCGGCg -3' miRNA: 3'- -CACuuUUUUUGUgugGUUGCCGCCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 188000 | 0.67 | 0.999991 |
Target: 5'- gGUGggGGcGACGgcggaugaGgCGACGGCGGCg -3' miRNA: 3'- -CACuuUUuUUGUg-------UgGUUGCCGCCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 311755 | 0.68 | 0.999944 |
Target: 5'- gGUGGAGAuggcGGugGCGgUAAUGGCGGUg -3' miRNA: 3'- -CACUUUU----UUugUGUgGUUGCCGCCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 50558 | 0.68 | 0.999968 |
Target: 5'- -aGAAGAAGACAucggucCACCGgaAUGGCGaGCa -3' miRNA: 3'- caCUUUUUUUGU------GUGGU--UGCCGC-CGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 380772 | 0.68 | 0.999957 |
Target: 5'- aGUGAGGAu-GCaACAaaAGCGGCGGUg -3' miRNA: 3'- -CACUUUUuuUG-UGUggUUGCCGCCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 61188 | 0.68 | 0.999957 |
Target: 5'- -cGAAggcgGAGGugGCGCCGgugAUGGCGGUg -3' miRNA: 3'- caCUU----UUUUugUGUGGU---UGCCGCCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 59718 | 0.68 | 0.999976 |
Target: 5'- gGUGGu--GAugGCGgCGGCGGUGGUg -3' miRNA: 3'- -CACUuuuUUugUGUgGUUGCCGCCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 311462 | 0.68 | 0.999976 |
Target: 5'- gGUGGAGGAG--GCACCggUGGUGGa- -3' miRNA: 3'- -CACUUUUUUugUGUGGuuGCCGCCga -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 266783 | 0.68 | 0.999968 |
Target: 5'- ---cAAAAGGCACAaugcagaCAguGCGGCGGCUc -3' miRNA: 3'- cacuUUUUUUGUGUg------GU--UGCCGCCGA- -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 401592 | 0.68 | 0.999968 |
Target: 5'- aGUGAAGAAGuauCugGCCGugcaGGUGGUUg -3' miRNA: 3'- -CACUUUUUUu--GugUGGUug--CCGCCGA- -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 238249 | 0.69 | 0.999799 |
Target: 5'- cGUGucgguGACugG-CGACGGCGGCUc -3' miRNA: 3'- -CACuuuuuUUGugUgGUUGCCGCCGA- -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 304867 | 0.69 | 0.999842 |
Target: 5'- -cGu--AAGAC-CACCGugGGCGGUa -3' miRNA: 3'- caCuuuUUUUGuGUGGUugCCGCCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 171310 | 0.69 | 0.999926 |
Target: 5'- -cGAcuu-GACAUACCGGCGGCaGCc -3' miRNA: 3'- caCUuuuuUUGUGUGGUUGCCGcCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 239292 | 0.69 | 0.999904 |
Target: 5'- -cGGAGAuuGCggcaaagugguAUGCCGACGGCGGUc -3' miRNA: 3'- caCUUUUuuUG-----------UGUGGUUGCCGCCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 339554 | 0.69 | 0.999926 |
Target: 5'- ---cAGGAGACAUACCcagugauauCGGCGGCg -3' miRNA: 3'- cacuUUUUUUGUGUGGuu-------GCCGCCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 198842 | 0.69 | 0.999904 |
Target: 5'- uUGAGAu-GGCgGCGgCGAUGGCGGCg -3' miRNA: 3'- cACUUUuuUUG-UGUgGUUGCCGCCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 200663 | 0.69 | 0.999926 |
Target: 5'- gGUGAucguGGGgGCAUUGGCGGUGGCg -3' miRNA: 3'- -CACUuuu-UUUgUGUGGUUGCCGCCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 349822 | 0.69 | 0.999842 |
Target: 5'- gGUGGAcuugguGGugGCGaCGACGGCGGCg -3' miRNA: 3'- -CACUUuu----UUugUGUgGUUGCCGCCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 308668 | 0.69 | 0.999877 |
Target: 5'- gGUGGAGGAGAU--GgUGGCGGCGGCa -3' miRNA: 3'- -CACUUUUUUUGugUgGUUGCCGCCGa -5' |
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32831 | 5' | -47.8 | NC_007346.1 | + | 238940 | 0.69 | 0.999877 |
Target: 5'- cUGGGAuGAugACgaGCUGAUGGCGGCg -3' miRNA: 3'- cACUUUuUUugUG--UGGUUGCCGCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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