miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32833 5' -51.2 NC_007346.1 + 253967 0.66 0.999804
Target:  5'- -------cGCGCGGagaaggUGGCCAUUaaGGCGg -3'
miRNA:   3'- augauuauUGCGCC------ACCGGUAA--CCGC- -5'
32833 5' -51.2 NC_007346.1 + 309747 0.66 0.999804
Target:  5'- ------gGugGCGGUGGaCUuggUGGCGg -3'
miRNA:   3'- augauuaUugCGCCACC-GGua-ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 59292 0.66 0.999804
Target:  5'- gGCggugGugGCGGUGGUaaaGgcGGCGg -3'
miRNA:   3'- aUGauuaUugCGCCACCGg--UaaCCGC- -5'
32833 5' -51.2 NC_007346.1 + 200495 0.66 0.999754
Target:  5'- uUACUcg-GugGUGGUggacuuugauguGGCCAgaUUGGCGg -3'
miRNA:   3'- -AUGAuuaUugCGCCA------------CCGGU--AACCGC- -5'
32833 5' -51.2 NC_007346.1 + 311648 0.66 0.999754
Target:  5'- aAUUGGUGGCgGCGGUaauGGCgAUggagaUGGCGg -3'
miRNA:   3'- aUGAUUAUUG-CGCCA---CCGgUA-----ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 306256 0.66 0.999754
Target:  5'- ------gGugGCGGUGGUaa-UGGCGg -3'
miRNA:   3'- augauuaUugCGCCACCGguaACCGC- -5'
32833 5' -51.2 NC_007346.1 + 311486 0.66 0.999754
Target:  5'- gGCggugGAgAugGCGGUGGa-GUUGGUGg -3'
miRNA:   3'- aUGa---UUaUugCGCCACCggUAACCGC- -5'
32833 5' -51.2 NC_007346.1 + 311525 0.66 0.999754
Target:  5'- gGCggugGAgAugGCGGUGGa-GUUGGUGg -3'
miRNA:   3'- aUGa---UUaUugCGCCACCggUAACCGC- -5'
32833 5' -51.2 NC_007346.1 + 197689 0.66 0.999692
Target:  5'- gGCg---AugGCGGUGGUgGagauggUGGCGg -3'
miRNA:   3'- aUGauuaUugCGCCACCGgUa-----ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 244775 0.66 0.999692
Target:  5'- cGCggc-GAUGCaGUGGCCAUuuagggaacuggUGGCGa -3'
miRNA:   3'- aUGauuaUUGCGcCACCGGUA------------ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 181949 0.66 0.999692
Target:  5'- gGCgggGGUGGCgGgGGUGGUgAUggUGGCGg -3'
miRNA:   3'- aUGa--UUAUUG-CgCCACCGgUA--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 181910 0.66 0.999692
Target:  5'- gGCgggGGUGGCgGgGGUGGUgAUggUGGCGg -3'
miRNA:   3'- aUGa--UUAUUG-CgCCACCGgUA--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 128488 0.66 0.999617
Target:  5'- gAUUGAUGGCgGCGGUGGaga-UGGUGa -3'
miRNA:   3'- aUGAUUAUUG-CGCCACCgguaACCGC- -5'
32833 5' -51.2 NC_007346.1 + 61203 0.66 0.999617
Target:  5'- cGCcGGUGAUgGCGGUGGgCug-GGCGg -3'
miRNA:   3'- aUGaUUAUUG-CGCCACCgGuaaCCGC- -5'
32833 5' -51.2 NC_007346.1 + 198153 0.66 0.999617
Target:  5'- gGgUGAUgGugGCGGUGGUgAUggUGGUGg -3'
miRNA:   3'- aUgAUUA-UugCGCCACCGgUA--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 274446 0.66 0.999527
Target:  5'- cGCg---AACGCGGUGcGCU--UGGCa -3'
miRNA:   3'- aUGauuaUUGCGCCAC-CGGuaACCGc -5'
32833 5' -51.2 NC_007346.1 + 198087 0.66 0.999418
Target:  5'- nGgUGAUgGugGUGGUGGCgGUggagaUGGCGg -3'
miRNA:   3'- aUgAUUA-UugCGCCACCGgUA-----ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 198255 0.66 0.999418
Target:  5'- nGgUGAUgGugGUGGUGGCgGUggagaUGGCGg -3'
miRNA:   3'- aUgAUUA-UugCGCCACCGgUA-----ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 200902 0.67 0.999289
Target:  5'- gGCgaccaugGugGUGGUGGCaacggUGGCGg -3'
miRNA:   3'- aUGauua---UugCGCCACCGgua--ACCGC- -5'
32833 5' -51.2 NC_007346.1 + 180776 0.67 0.999289
Target:  5'- aACUug-GugGCGGUGGUgAU-GGUGa -3'
miRNA:   3'- aUGAuuaUugCGCCACCGgUAaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.