miRNA display CGI


Results 41 - 60 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32840 3' -53 NC_007346.1 + 198293 0.68 0.988173
Target:  5'- gUGAUGGugguGGgGGCGAUGGugGUGgGGg -3'
miRNA:   3'- -AUUAUCuu--CCgCCGCUACC--UACgCCg -5'
32840 3' -53 NC_007346.1 + 128669 0.69 0.986693
Target:  5'- ----cGAAcGGCGGCGAUGG-UGaaGCa -3'
miRNA:   3'- auuauCUU-CCGCCGCUACCuACgcCG- -5'
32840 3' -53 NC_007346.1 + 270693 0.69 0.986693
Target:  5'- gAAUGGcggcaauGGUGGUGAUGGugGUGGCa -3'
miRNA:   3'- aUUAUCuu-----CCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 128227 0.69 0.985075
Target:  5'- ----cGAcGGUGGUGgcGGAgaugGCGGCg -3'
miRNA:   3'- auuauCUuCCGCCGCuaCCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 200930 0.69 0.985075
Target:  5'- aGAUGGugGAGGCGGagggGAUGGAUcgGGCg -3'
miRNA:   3'- aUUAUC--UUCCGCCg---CUACCUAcgCCG- -5'
32840 3' -53 NC_007346.1 + 61158 0.69 0.98331
Target:  5'- cGGUGGAGGuaaUGGCGGUGGAgGCaaaGGCg -3'
miRNA:   3'- aUUAUCUUCc--GCCGCUACCUaCG---CCG- -5'
32840 3' -53 NC_007346.1 + 311771 0.69 0.98331
Target:  5'- ----cGGAGGUuggcuuGGUGGUGGAgaugGCGGUg -3'
miRNA:   3'- auuauCUUCCG------CCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 308675 0.69 0.98331
Target:  5'- cAAUGGu-GGUGGaggagauGGUGGcgGCGGCa -3'
miRNA:   3'- aUUAUCuuCCGCCg------CUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 58047 0.69 0.98331
Target:  5'- aGGUGGAgcGGGUGGUGGguucGGUGaCGGCg -3'
miRNA:   3'- aUUAUCU--UCCGCCGCUac--CUAC-GCCG- -5'
32840 3' -53 NC_007346.1 + 200617 0.69 0.981192
Target:  5'- uUGGUGG-AGGCGGUGAUGG-UGauacauuUGGCc -3'
miRNA:   3'- -AUUAUCuUCCGCCGCUACCuAC-------GCCG- -5'
32840 3' -53 NC_007346.1 + 307573 0.69 0.979314
Target:  5'- gUAAUGGuaauGGUGGUGGaGGAgaugGCGGUg -3'
miRNA:   3'- -AUUAUCuu--CCGCCGCUaCCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 198640 0.69 0.979314
Target:  5'- gUGGUGGggGuGaUGGUGGUGGGggugaugGUGGCg -3'
miRNA:   3'- -AUUAUCuuC-C-GCCGCUACCUa------CGCCG- -5'
32840 3' -53 NC_007346.1 + 61194 0.69 0.979314
Target:  5'- ----cGGAGGUGGCGccGGugaugGCGGUg -3'
miRNA:   3'- auuauCUUCCGCCGCuaCCua---CGCCG- -5'
32840 3' -53 NC_007346.1 + 200795 0.69 0.979314
Target:  5'- cGGUGG-AGGCGGCGGUgacGGAacCGGUg -3'
miRNA:   3'- aUUAUCuUCCGCCGCUA---CCUacGCCG- -5'
32840 3' -53 NC_007346.1 + 308771 0.69 0.978436
Target:  5'- cGGUGG-GGGCaauGGUGGUGGAggcaaugguggugGCGGCa -3'
miRNA:   3'- aUUAUCuUCCG---CCGCUACCUa------------CGCCG- -5'
32840 3' -53 NC_007346.1 + 198141 0.7 0.977068
Target:  5'- cGAUGGugguGGgGGUGAUGGugGCGGUg -3'
miRNA:   3'- aUUAUCuu--CCgCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 343213 0.7 0.974648
Target:  5'- -uAUGGAgcAGGCGGUGG-GGAUGaUGGUu -3'
miRNA:   3'- auUAUCU--UCCGCCGCUaCCUAC-GCCG- -5'
32840 3' -53 NC_007346.1 + 306017 0.7 0.972047
Target:  5'- aGAUGGGGaagucgauGGUGGgGGUGGGgaugGUGGCg -3'
miRNA:   3'- aUUAUCUU--------CCGCCgCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 309946 0.7 0.972047
Target:  5'- cGGUGGu-GGCGGCaaugguGGUGGAggagauggugGCGGCg -3'
miRNA:   3'- aUUAUCuuCCGCCG------CUACCUa---------CGCCG- -5'
32840 3' -53 NC_007346.1 + 200889 0.7 0.972047
Target:  5'- gUGGUGGcaacgguGGCGGUGAUGGugaugGUGGUg -3'
miRNA:   3'- -AUUAUCuu-----CCGCCGCUACCua---CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.