miRNA display CGI


Results 21 - 40 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32840 3' -53 NC_007346.1 + 128120 0.67 0.996167
Target:  5'- gUAAUGGugGAGGCGGacuuggugguggacuUGGUGGAgGCGGa -3'
miRNA:   3'- -AUUAUC--UUCCGCC---------------GCUACCUaCGCCg -5'
32840 3' -53 NC_007346.1 + 184828 0.67 0.995931
Target:  5'- ---gGGGAGGUgggGGUGAUGGGggagGgGGUa -3'
miRNA:   3'- auuaUCUUCCG---CCGCUACCUa---CgCCG- -5'
32840 3' -53 NC_007346.1 + 253961 0.67 0.995931
Target:  5'- ---gAGAAGGUGGCcauuaaGgcGGGUGUGuGCa -3'
miRNA:   3'- auuaUCUUCCGCCG------CuaCCUACGC-CG- -5'
32840 3' -53 NC_007346.1 + 305748 0.67 0.995931
Target:  5'- ---aAGggGGCGGUagagacGGUGGAgaCGGUa -3'
miRNA:   3'- auuaUCuuCCGCCG------CUACCUacGCCG- -5'
32840 3' -53 NC_007346.1 + 109765 0.67 0.995931
Target:  5'- aGGUGG-AGGUGGCGcaacUGGGguagGUGGUg -3'
miRNA:   3'- aUUAUCuUCCGCCGCu---ACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 238236 0.67 0.995931
Target:  5'- cGAUAGAAaGCGGCGugucggugacUGGcgacgGCGGCu -3'
miRNA:   3'- aUUAUCUUcCGCCGCu---------ACCua---CGCCG- -5'
32840 3' -53 NC_007346.1 + 180835 0.67 0.99529
Target:  5'- uUGGUGGAggucgAGGUGGUGG-GGAUGaUGGUu -3'
miRNA:   3'- -AUUAUCU-----UCCGCCGCUaCCUAC-GCCG- -5'
32840 3' -53 NC_007346.1 + 310507 0.67 0.994645
Target:  5'- cGAUGGuggGGGUGGgGAUGGugagagcgaaggggGUGGCg -3'
miRNA:   3'- aUUAUCu--UCCGCCgCUACCua------------CGCCG- -5'
32840 3' -53 NC_007346.1 + 310427 0.67 0.994569
Target:  5'- ---cAGAGGGaGGUGGUGGGgaUGGCg -3'
miRNA:   3'- auuaUCUUCCgCCGCUACCUacGCCG- -5'
32840 3' -53 NC_007346.1 + 60381 0.67 0.994569
Target:  5'- --nUGGGguGGGUGGUGGUGGAgaCGGUu -3'
miRNA:   3'- auuAUCU--UCCGCCGCUACCUacGCCG- -5'
32840 3' -53 NC_007346.1 + 310375 0.67 0.993762
Target:  5'- gAGU-GAAGGgGGUGG-GGGUGaUGGCg -3'
miRNA:   3'- aUUAuCUUCCgCCGCUaCCUAC-GCCG- -5'
32840 3' -53 NC_007346.1 + 307875 0.67 0.993762
Target:  5'- cAAUGGu-GGUGGaggaGAUGGugGCGGCg -3'
miRNA:   3'- aUUAUCuuCCGCCg---CUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 305808 0.67 0.993762
Target:  5'- aGAgcGAAGGaGGCGGUGGAgaUGgGGa -3'
miRNA:   3'- aUUauCUUCCgCCGCUACCU--ACgCCg -5'
32840 3' -53 NC_007346.1 + 324768 0.68 0.992861
Target:  5'- ----cGguGGUGGUGGUGGuUGUGGUg -3'
miRNA:   3'- auuauCuuCCGCCGCUACCuACGCCG- -5'
32840 3' -53 NC_007346.1 + 181919 0.68 0.992861
Target:  5'- gGAgguGAuGGCGGgGGUGGcgGgGGUg -3'
miRNA:   3'- aUUau-CUuCCGCCgCUACCuaCgCCG- -5'
32840 3' -53 NC_007346.1 + 200655 0.68 0.991859
Target:  5'- ----uGggGGCauuGGCGGUGGcgGUgauGGCg -3'
miRNA:   3'- auuauCuuCCG---CCGCUACCuaCG---CCG- -5'
32840 3' -53 NC_007346.1 + 180933 0.68 0.990749
Target:  5'- cGAUGGu-GGaGGCGAUGGAgaugguuguUGUGGUg -3'
miRNA:   3'- aUUAUCuuCCgCCGCUACCU---------ACGCCG- -5'
32840 3' -53 NC_007346.1 + 32375 0.68 0.988173
Target:  5'- gUGGUuuuGgcGGCGGCGGUuuuGGUGaCGGCa -3'
miRNA:   3'- -AUUAu--CuuCCGCCGCUAc--CUAC-GCCG- -5'
32840 3' -53 NC_007346.1 + 198500 0.68 0.988173
Target:  5'- gUGAUGGugguGGgGGCGAUGGugGUGgGGg -3'
miRNA:   3'- -AUUAUCuu--CCgCCGCUACC--UACgCCg -5'
32840 3' -53 NC_007346.1 + 198293 0.68 0.988173
Target:  5'- gUGAUGGugguGGgGGCGAUGGugGUGgGGg -3'
miRNA:   3'- -AUUAUCuu--CCgCCGCUACC--UACgCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.