Results 21 - 40 of 253 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32840 | 3' | -53 | NC_007346.1 | + | 59275 | 0.79 | 0.635306 |
Target: 5'- gUGGUGGAGaauuuGGCGGCGGUGGugGCGGUg -3' miRNA: 3'- -AUUAUCUU-----CCGCCGCUACCuaCGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 197966 | 0.8 | 0.576065 |
Target: 5'- gUGGUGGAGauGGUGGUGGUGGAgaugGCGGUg -3' miRNA: 3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 198845 | 0.82 | 0.453736 |
Target: 5'- aGAUGGc-GGCGGCGAUGGcgGCGGg -3' miRNA: 3'- aUUAUCuuCCGCCGCUACCuaCGCCg -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 197636 | 0.88 | 0.241847 |
Target: 5'- gUGAUGGu-GGUGGCGAUGGcgGCGGCg -3' miRNA: 3'- -AUUAUCuuCCGCCGCUACCuaCGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 60289 | 0.75 | 0.82248 |
Target: 5'- ----cGGAGGUgauGGCGGUGGAgGCGGUg -3' miRNA: 3'- auuauCUUCCG---CCGCUACCUaCGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 197751 | 0.77 | 0.742451 |
Target: 5'- cGAUGGugguGGUGGCGAUGGcgGUGGa -3' miRNA: 3'- aUUAUCuu--CCGCCGCUACCuaCGCCg -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 198333 | 0.8 | 0.546862 |
Target: 5'- cGGUGGAGauGGCGGUGGUGGAgauggugGUGGCg -3' miRNA: 3'- aUUAUCUU--CCGCCGCUACCUa------CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 57516 | 0.88 | 0.241847 |
Target: 5'- ---aGGGAGGCGGCGAUGGAgGCGGa -3' miRNA: 3'- auuaUCUUCCGCCGCUACCUaCGCCg -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 165601 | 0.77 | 0.732997 |
Target: 5'- ---aAGguGGCGGCGAUGGugGUGGCg -3' miRNA: 3'- auuaUCuuCCGCCGCUACCuaCGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 59707 | 0.9 | 0.186065 |
Target: 5'- aUGAUGGAggAGGUGGUGAUGGcgGCGGCg -3' miRNA: 3'- -AUUAUCU--UCCGCCGCUACCuaCGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 198440 | 0.8 | 0.566285 |
Target: 5'- ---gAGAuGGCGGUGGUGGAgaugGCGGUg -3' miRNA: 3'- auuaUCUuCCGCCGCUACCUa---CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 198752 | 0.78 | 0.684663 |
Target: 5'- aGAUGGu-GGUGGUGGUGGAgaugGUGGCg -3' miRNA: 3'- aUUAUCuuCCGCCGCUACCUa---CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 198554 | 0.81 | 0.527655 |
Target: 5'- gUGGUGGAGauGGCGGUGGUGGAgauggugGUGGCg -3' miRNA: 3'- -AUUAUCUU--CCGCCGCUACCUa------CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 198089 | 0.82 | 0.480839 |
Target: 5'- gUGAUGGugguGGUGGCGGUGGAgaugGCGGUg -3' miRNA: 3'- -AUUAUCuu--CCGCCGCUACCUa---CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 198041 | 0.83 | 0.402155 |
Target: 5'- gUGGUGGAGauGGCGGUGGUGGAgaugGUGGCg -3' miRNA: 3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 197699 | 0.83 | 0.402155 |
Target: 5'- gUGGUGGAGauGGUGGCGGUGGAgaugGCGGUg -3' miRNA: 3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 198170 | 0.73 | 0.889516 |
Target: 5'- gUGAUGGugguGGUGGUGAUGGugGUGGCg -3' miRNA: 3'- -AUUAUCuu--CCGCCGCUACCuaCGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 49987 | 0.75 | 0.838677 |
Target: 5'- -uGUGGu-GGUGGCGAUGGuggugGUGGCg -3' miRNA: 3'- auUAUCuuCCGCCGCUACCua---CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 58103 | 0.76 | 0.77928 |
Target: 5'- ---aAGGAGGUGGCGAuaaugguggaggUGGAgucgGUGGCg -3' miRNA: 3'- auuaUCUUCCGCCGCU------------ACCUa---CGCCG- -5' |
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32840 | 3' | -53 | NC_007346.1 | + | 198404 | 0.76 | 0.751815 |
Target: 5'- gUGGUGGAGgcgauGGCGGUGGUGGuggugGUGGCg -3' miRNA: 3'- -AUUAUCUU-----CCGCCGCUACCua---CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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