miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32840 3' -53 NC_007346.1 + 368718 1.11 0.009764
Target:  5'- gUAAUAGAAGGCGGCGAUGGAUGCGGCa -3'
miRNA:   3'- -AUUAUCUUCCGCCGCUACCUACGCCG- -5'
32840 3' -53 NC_007346.1 + 198333 0.8 0.546862
Target:  5'- cGGUGGAGauGGCGGUGGUGGAgauggugGUGGCg -3'
miRNA:   3'- aUUAUCUU--CCGCCGCUACCUa------CGCCG- -5'
32840 3' -53 NC_007346.1 + 197966 0.8 0.576065
Target:  5'- gUGGUGGAGauGGUGGUGGUGGAgaugGCGGUg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 177830 0.66 0.998451
Target:  5'- gUGAUAGugcGGGUgcgGGCGca-GGUGCGGCu -3'
miRNA:   3'- -AUUAUCu--UCCG---CCGCuacCUACGCCG- -5'
32840 3' -53 NC_007346.1 + 197699 0.83 0.402155
Target:  5'- gUGGUGGAGauGGUGGCGGUGGAgaugGCGGUg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 197849 0.83 0.402155
Target:  5'- gUGGUGGAGauGGUGGCGGUGGAgaugGUGGCg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 198041 0.83 0.402155
Target:  5'- gUGGUGGAGauGGCGGUGGUGGAgaugGUGGCg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 198209 0.83 0.402155
Target:  5'- gUGGUGGAGauGGCGGUGGUGGAgaugGUGGCg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 198089 0.82 0.480839
Target:  5'- gUGAUGGugguGGUGGCGGUGGAgaugGCGGUg -3'
miRNA:   3'- -AUUAUCuu--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 57420 0.81 0.527655
Target:  5'- aUGGUGGugaauuGGGCGGCGggGGAaaugGCGGCg -3'
miRNA:   3'- -AUUAUCu-----UCCGCCGCuaCCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 86724 0.81 0.499337
Target:  5'- ---cGGuuGGGCGGCGGaGGGUGCGGCc -3'
miRNA:   3'- auuaUCu-UCCGCCGCUaCCUACGCCG- -5'
32840 3' -53 NC_007346.1 + 198845 0.82 0.453736
Target:  5'- aGAUGGc-GGCGGCGAUGGcgGCGGg -3'
miRNA:   3'- aUUAUCuuCCGCCGCUACCuaCGCCg -5'
32840 3' -53 NC_007346.1 + 59707 0.9 0.186065
Target:  5'- aUGAUGGAggAGGUGGUGAUGGcgGCGGCg -3'
miRNA:   3'- -AUUAUCU--UCCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 198554 0.81 0.527655
Target:  5'- gUGGUGGAGauGGCGGUGGUGGAgauggugGUGGCg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCUa------CGCCG- -5'
32840 3' -53 NC_007346.1 + 57516 0.88 0.241847
Target:  5'- ---aGGGAGGCGGCGAUGGAgGCGGa -3'
miRNA:   3'- auuaUCUUCCGCCGCUACCUaCGCCg -5'
32840 3' -53 NC_007346.1 + 197811 0.83 0.444888
Target:  5'- cGAUGGuggcGGUGGCGAUGGcgGUGGCg -3'
miRNA:   3'- aUUAUCuu--CCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 198784 0.81 0.527655
Target:  5'- gUGAUGGugguGGgGGCGAUGGcgGUGGCg -3'
miRNA:   3'- -AUUAUCuu--CCgCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 198440 0.8 0.566285
Target:  5'- ---gAGAuGGCGGUGGUGGAgaugGCGGUg -3'
miRNA:   3'- auuaUCUuCCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 197636 0.88 0.241847
Target:  5'- gUGAUGGu-GGUGGCGAUGGcgGCGGCg -3'
miRNA:   3'- -AUUAUCuuCCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 197933 0.83 0.402155
Target:  5'- gUGGUGGAGauGGUGGCGGUGGAgaugGCGGUg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.