miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32840 3' -53 NC_007346.1 + 368718 1.11 0.009764
Target:  5'- gUAAUAGAAGGCGGCGAUGGAUGCGGCa -3'
miRNA:   3'- -AUUAUCUUCCGCCGCUACCUACGCCG- -5'
32840 3' -53 NC_007346.1 + 189548 0.9 0.172953
Target:  5'- cGGU-GAGGGCGGCGGUGGAgaugGCGGCg -3'
miRNA:   3'- aUUAuCUUCCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 59707 0.9 0.186065
Target:  5'- aUGAUGGAggAGGUGGUGAUGGcgGCGGCg -3'
miRNA:   3'- -AUUAUCU--UCCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 307800 0.9 0.195287
Target:  5'- aGGUGGAgcAGGCGGCGGUGGAguugGUGGCg -3'
miRNA:   3'- aUUAUCU--UCCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 308334 0.9 0.195287
Target:  5'- aGGUGGAgcAGGCGGCGGUGGAguugGUGGCg -3'
miRNA:   3'- aUUAUCU--UCCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 308061 0.9 0.195287
Target:  5'- aGGUGGAgcAGGCGGCGGUGGAguugGUGGCg -3'
miRNA:   3'- aUUAUCU--UCCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 307528 0.9 0.195287
Target:  5'- aGGUGGAgcAGGCGGCGGUGGAguugGUGGCg -3'
miRNA:   3'- aUUAUCU--UCCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 308606 0.9 0.195287
Target:  5'- aGGUGGAgcAGGCGGCGGUGGAguugGUGGCg -3'
miRNA:   3'- aUUAUCU--UCCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 57516 0.88 0.241847
Target:  5'- ---aGGGAGGCGGCGAUGGAgGCGGa -3'
miRNA:   3'- auuaUCUUCCGCCGCUACCUaCGCCg -5'
32840 3' -53 NC_007346.1 + 197636 0.88 0.241847
Target:  5'- gUGAUGGu-GGUGGCGAUGGcgGCGGCg -3'
miRNA:   3'- -AUUAUCuuCCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 188410 0.87 0.259309
Target:  5'- gUAAUGGcgGAGGCGGCGAUGGcggagGCGGCg -3'
miRNA:   3'- -AUUAUC--UUCCGCCGCUACCua---CGCCG- -5'
32840 3' -53 NC_007346.1 + 307343 0.86 0.290677
Target:  5'- gUGGUGGAgcAGGCGGUGGUGGAguugGUGGCg -3'
miRNA:   3'- -AUUAUCU--UCCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 188046 0.85 0.324942
Target:  5'- gGGUGGcggcguGGGCGGCGGUGGGgaggGCGGCg -3'
miRNA:   3'- aUUAUCu-----UCCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 309717 0.85 0.324942
Target:  5'- --cUGGGAGGCGGCGGgcucGGcgGCGGCg -3'
miRNA:   3'- auuAUCUUCCGCCGCUa---CCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 349802 0.85 0.332145
Target:  5'- ----cGAcGGCGGCGGUGGcgGCGGCg -3'
miRNA:   3'- auuauCUuCCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 307193 0.85 0.339466
Target:  5'- gUGGUGGAGauGGUGGCGGUGGAcuugGCGGCg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 310109 0.85 0.354454
Target:  5'- ---gAGAuGGCGGCGGUGGAguuggugGCGGCg -3'
miRNA:   3'- auuaUCUuCCGCCGCUACCUa------CGCCG- -5'
32840 3' -53 NC_007346.1 + 307152 0.85 0.354454
Target:  5'- --cUGGggGGCGGCGGgcucGGcgGCGGCg -3'
miRNA:   3'- auuAUCuuCCGCCGCUa---CCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 200996 0.84 0.385807
Target:  5'- cGGUGGAuauGGCGGCGGcgguugauuuggUGGAUGCGGUg -3'
miRNA:   3'- aUUAUCUu--CCGCCGCU------------ACCUACGCCG- -5'
32840 3' -53 NC_007346.1 + 128018 0.83 0.402155
Target:  5'- gUGGUGGAcucGGCGGUGGUGGAcucgGCGGCg -3'
miRNA:   3'- -AUUAUCUu--CCGCCGCUACCUa---CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.