miRNA display CGI


Results 21 - 40 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32840 3' -53 NC_007346.1 + 198041 0.83 0.402155
Target:  5'- gUGGUGGAGauGGCGGUGGUGGAgaugGUGGCg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 197933 0.83 0.402155
Target:  5'- gUGGUGGAGauGGUGGCGGUGGAgaugGCGGUg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 197849 0.83 0.402155
Target:  5'- gUGGUGGAGauGGUGGCGGUGGAgaugGUGGCg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 128018 0.83 0.402155
Target:  5'- gUGGUGGAcucGGCGGUGGUGGAcucgGCGGCg -3'
miRNA:   3'- -AUUAUCUu--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 197699 0.83 0.402155
Target:  5'- gUGGUGGAGauGGUGGCGGUGGAgaugGCGGUg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 308858 0.83 0.410492
Target:  5'- gGGUGGAGuuGGUGGCGGUGGAgaugGCGGUg -3'
miRNA:   3'- aUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 308250 0.83 0.418937
Target:  5'- aGGUGGAGuuGGUGGCGGUGGAgaugGCGGUg -3'
miRNA:   3'- aUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 308523 0.83 0.418937
Target:  5'- aGGUGGAGuuGGUGGCGGUGGAgaugGCGGUg -3'
miRNA:   3'- aUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 307444 0.83 0.418937
Target:  5'- aGGUGGAGuuGGUGGCGGUGGAgaugGCGGUg -3'
miRNA:   3'- aUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 307716 0.83 0.418937
Target:  5'- aGGUGGAGuuGGUGGCGGUGGAgaugGCGGUg -3'
miRNA:   3'- aUUAUCUU--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 189231 0.83 0.427486
Target:  5'- gUGAUGGu-GGUGGUGAUGGAggugGCGGCg -3'
miRNA:   3'- -AUUAUCuuCCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 314706 0.83 0.427486
Target:  5'- uUGGUGGGGguGGCGGUGGUGGggGCGGUg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 306306 0.83 0.444888
Target:  5'- ---gAGAuGGCGGCGGUGGAauuggugGCGGCg -3'
miRNA:   3'- auuaUCUuCCGCCGCUACCUa------CGCCG- -5'
32840 3' -53 NC_007346.1 + 197811 0.83 0.444888
Target:  5'- cGAUGGuggcGGUGGCGAUGGcgGUGGCg -3'
miRNA:   3'- aUUAUCuu--CCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 309758 0.82 0.453736
Target:  5'- gUGGUGGAGauGGUGGCGGUGGAcuuggugGCGGCg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCUa------CGCCG- -5'
32840 3' -53 NC_007346.1 + 198845 0.82 0.453736
Target:  5'- aGAUGGc-GGCGGCGAUGGcgGCGGg -3'
miRNA:   3'- aUUAUCuuCCGCCGCUACCuaCGCCg -5'
32840 3' -53 NC_007346.1 + 311669 0.82 0.471715
Target:  5'- cGGUGGAGauGGUGGCGGUGGAauuggugGCGGCg -3'
miRNA:   3'- aUUAUCUU--CCGCCGCUACCUa------CGCCG- -5'
32840 3' -53 NC_007346.1 + 310240 0.82 0.471715
Target:  5'- cGGUGGuaAAGGCGGCGGUGGuaaugGCGGUg -3'
miRNA:   3'- aUUAUC--UUCCGCCGCUACCua---CGCCG- -5'
32840 3' -53 NC_007346.1 + 128258 0.82 0.480839
Target:  5'- gUGAUGGugguGGCGGUGAUGGuggcgGCGGCg -3'
miRNA:   3'- -AUUAUCuu--CCGCCGCUACCua---CGCCG- -5'
32840 3' -53 NC_007346.1 + 198089 0.82 0.480839
Target:  5'- gUGAUGGugguGGUGGCGGUGGAgaugGCGGUg -3'
miRNA:   3'- -AUUAUCuu--CCGCCGCUACCUa---CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.