miRNA display CGI


Results 21 - 40 of 253 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32840 3' -53 NC_007346.1 + 60351 0.77 0.723461
Target:  5'- gUGAUGGugguGGCGGUGGUGGugaugGCGGUg -3'
miRNA:   3'- -AUUAUCuu--CCGCCGCUACCua---CGCCG- -5'
32840 3' -53 NC_007346.1 + 60381 0.67 0.994569
Target:  5'- --nUGGGguGGGUGGUGGUGGAgaCGGUu -3'
miRNA:   3'- auuAUCU--UCCGCCGCUACCUacGCCG- -5'
32840 3' -53 NC_007346.1 + 61130 0.74 0.868912
Target:  5'- ---gAGGAGGUGGUGAUGGcgccgGUGaUGGCg -3'
miRNA:   3'- auuaUCUUCCGCCGCUACC-----UAC-GCCG- -5'
32840 3' -53 NC_007346.1 + 61158 0.69 0.98331
Target:  5'- cGGUGGAGGuaaUGGCGGUGGAgGCaaaGGCg -3'
miRNA:   3'- aUUAUCUUCc--GCCGCUACCUaCG---CCG- -5'
32840 3' -53 NC_007346.1 + 61194 0.69 0.979314
Target:  5'- ----cGGAGGUGGCGccGGugaugGCGGUg -3'
miRNA:   3'- auuauCUUCCGCCGCuaCCua---CGCCG- -5'
32840 3' -53 NC_007346.1 + 61235 0.66 0.99744
Target:  5'- gUGAUGG-AGGUGGaGGUGGAggugaugGUGGUu -3'
miRNA:   3'- -AUUAUCuUCCGCCgCUACCUa------CGCCG- -5'
32840 3' -53 NC_007346.1 + 63484 0.66 0.998701
Target:  5'- gUGGUGG-AGGUGGagauGGUGGAggcaaggaugGUGGCa -3'
miRNA:   3'- -AUUAUCuUCCGCCg---CUACCUa---------CGCCG- -5'
32840 3' -53 NC_007346.1 + 63528 0.66 0.99816
Target:  5'- aGAUGGugGAGGUGGagauGGUGGAggcaaggaugGUGGCa -3'
miRNA:   3'- aUUAUC--UUCCGCCg---CUACCUa---------CGCCG- -5'
32840 3' -53 NC_007346.1 + 86618 0.68 0.988173
Target:  5'- ---cAGAAgccGGCGGUcuGGUGGcGUGCGGUc -3'
miRNA:   3'- auuaUCUU---CCGCCG--CUACC-UACGCCG- -5'
32840 3' -53 NC_007346.1 + 86724 0.81 0.499337
Target:  5'- ---cGGuuGGGCGGCGGaGGGUGCGGCc -3'
miRNA:   3'- auuaUCu-UCCGCCGCUaCCUACGCCG- -5'
32840 3' -53 NC_007346.1 + 109765 0.67 0.995931
Target:  5'- aGGUGG-AGGUGGCGcaacUGGGguagGUGGUg -3'
miRNA:   3'- aUUAUCuUCCGCCGCu---ACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 128018 0.83 0.402155
Target:  5'- gUGGUGGAcucGGCGGUGGUGGAcucgGCGGCg -3'
miRNA:   3'- -AUUAUCUu--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 128054 0.66 0.998451
Target:  5'- gUAAUGGcgGAGGacuuGGCGGUGGAggacuUGGCg -3'
miRNA:   3'- -AUUAUC--UUCCg---CCGCUACCUac---GCCG- -5'
32840 3' -53 NC_007346.1 + 128120 0.67 0.996167
Target:  5'- gUAAUGGugGAGGCGGacuuggugguggacuUGGUGGAgGCGGa -3'
miRNA:   3'- -AUUAUC--UUCCGCC---------------GCUACCUaCGCCg -5'
32840 3' -53 NC_007346.1 + 128159 0.66 0.998701
Target:  5'- uUGGUGG-AGGCGGacuuGGUGGAgacggacuugGUGGUg -3'
miRNA:   3'- -AUUAUCuUCCGCCg---CUACCUa---------CGCCG- -5'
32840 3' -53 NC_007346.1 + 128201 0.74 0.846516
Target:  5'- ---gAGAuGGCGGUGAcGGcgGUGGCg -3'
miRNA:   3'- auuaUCUuCCGCCGCUaCCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 128227 0.69 0.985075
Target:  5'- ----cGAcGGUGGUGgcGGAgaugGCGGCg -3'
miRNA:   3'- auuauCUuCCGCCGCuaCCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 128258 0.82 0.480839
Target:  5'- gUGAUGGugguGGCGGUGAUGGuggcgGCGGCg -3'
miRNA:   3'- -AUUAUCuu--CCGCCGCUACCua---CGCCG- -5'
32840 3' -53 NC_007346.1 + 128306 0.8 0.59573
Target:  5'- gUGGUGGAcuugguGGUGGCGAUGGcgGUGGUg -3'
miRNA:   3'- -AUUAUCUu-----CCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 128342 0.74 0.861638
Target:  5'- ---gAGAuGGCGGUGGUGGcgaugGUGGCg -3'
miRNA:   3'- auuaUCUuCCGCCGCUACCua---CGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.