miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32840 3' -53 NC_007346.1 + 32375 0.68 0.988173
Target:  5'- gUGGUuuuGgcGGCGGCGGUuuuGGUGaCGGCa -3'
miRNA:   3'- -AUUAu--CuuCCGCCGCUAc--CUAC-GCCG- -5'
32840 3' -53 NC_007346.1 + 49987 0.75 0.838677
Target:  5'- -uGUGGu-GGUGGCGAUGGuggugGUGGCg -3'
miRNA:   3'- auUAUCuuCCGCCGCUACCua---CGCCG- -5'
32840 3' -53 NC_007346.1 + 50029 0.66 0.997825
Target:  5'- -uGUGGcgacgcuGGUGGCGGUGGGUacGCaaGGCa -3'
miRNA:   3'- auUAUCuu-----CCGCCGCUACCUA--CG--CCG- -5'
32840 3' -53 NC_007346.1 + 56680 0.72 0.939625
Target:  5'- ---cAGgcGGUGGUGGUGGAgcaggaucagGCGGUg -3'
miRNA:   3'- auuaUCuuCCGCCGCUACCUa---------CGCCG- -5'
32840 3' -53 NC_007346.1 + 56734 0.71 0.952329
Target:  5'- gUGGUAGcaauGGCGGgGAugcUGGcgGUGGCg -3'
miRNA:   3'- -AUUAUCuu--CCGCCgCU---ACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 56767 0.66 0.997825
Target:  5'- gUGAUGGcgGAGGUGGUGAUGG---UGGUg -3'
miRNA:   3'- -AUUAUC--UUCCGCCGCUACCuacGCCG- -5'
32840 3' -53 NC_007346.1 + 56794 0.71 0.951147
Target:  5'- aUGGUGGAAguggugguucugauGGCGGUGGUGGAgccGcCGGUg -3'
miRNA:   3'- -AUUAUCUU--------------CCGCCGCUACCUa--C-GCCG- -5'
32840 3' -53 NC_007346.1 + 57420 0.81 0.527655
Target:  5'- aUGGUGGugaauuGGGCGGCGggGGAaaugGCGGCg -3'
miRNA:   3'- -AUUAUCu-----UCCGCCGCuaCCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 57477 0.72 0.934948
Target:  5'- aUGGUGGAGGuuGCaauGGCGGUGGAgagggagGUGGCg -3'
miRNA:   3'- -AUUAUCUUC--CG---CCGCUACCUa------CGCCG- -5'
32840 3' -53 NC_007346.1 + 57516 0.88 0.241847
Target:  5'- ---aGGGAGGCGGCGAUGGAgGCGGa -3'
miRNA:   3'- auuaUCUUCCGCCGCUACCUaCGCCg -5'
32840 3' -53 NC_007346.1 + 58017 0.71 0.948313
Target:  5'- aAAUGGAA-GCGGCGGUGGAggaGaCGGa -3'
miRNA:   3'- aUUAUCUUcCGCCGCUACCUa--C-GCCg -5'
32840 3' -53 NC_007346.1 + 58047 0.69 0.98331
Target:  5'- aGGUGGAgcGGGUGGUGGguucGGUGaCGGCg -3'
miRNA:   3'- aUUAUCU--UCCGCCGCUac--CUAC-GCCG- -5'
32840 3' -53 NC_007346.1 + 58103 0.76 0.77928
Target:  5'- ---aAGGAGGUGGCGAuaaugguggaggUGGAgucgGUGGCg -3'
miRNA:   3'- auuaUCUUCCGCCGCU------------ACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 58158 0.72 0.919577
Target:  5'- aGAUGGu-GGgGGaGAUGGcgGCGGCg -3'
miRNA:   3'- aUUAUCuuCCgCCgCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 58793 0.76 0.758312
Target:  5'- cUGGUGGAGGGgaugguggcggauaUGGCGAUGGAggcaaugGCGGUg -3'
miRNA:   3'- -AUUAUCUUCC--------------GCCGCUACCUa------CGCCG- -5'
32840 3' -53 NC_007346.1 + 59275 0.79 0.635306
Target:  5'- gUGGUGGAGaauuuGGCGGCGGUGGugGCGGUg -3'
miRNA:   3'- -AUUAUCUU-----CCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 59305 0.66 0.997825
Target:  5'- nUGGUA-AAGGCGGCGGaGGugaagGUGGUg -3'
miRNA:   3'- -AUUAUcUUCCGCCGCUaCCua---CGCCG- -5'
32840 3' -53 NC_007346.1 + 59707 0.9 0.186065
Target:  5'- aUGAUGGAggAGGUGGUGAUGGcgGCGGCg -3'
miRNA:   3'- -AUUAUCU--UCCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 59750 0.79 0.605603
Target:  5'- cGGUGGugauGGUGGUGAUGGggGUGGCg -3'
miRNA:   3'- aUUAUCuu--CCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 60289 0.75 0.82248
Target:  5'- ----cGGAGGUgauGGCGGUGGAgGCGGUg -3'
miRNA:   3'- auuauCUUCCG---CCGCUACCUaCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.