miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32840 3' -53 NC_007346.1 + 368718 1.11 0.009764
Target:  5'- gUAAUAGAAGGCGGCGAUGGAUGCGGCa -3'
miRNA:   3'- -AUUAUCUUCCGCCGCUACCUACGCCG- -5'
32840 3' -53 NC_007346.1 + 349842 0.74 0.875985
Target:  5'- uUGGUGGugaacuuGGUGGCGGUGGAcuuggugGUGGCg -3'
miRNA:   3'- -AUUAUCuu-----CCGCCGCUACCUa------CGCCG- -5'
32840 3' -53 NC_007346.1 + 349802 0.85 0.332145
Target:  5'- ----cGAcGGCGGCGGUGGcgGCGGCg -3'
miRNA:   3'- auuauCUuCCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 349781 0.73 0.914006
Target:  5'- ----cGgcGGCGGCGGUGGcGUGaGGCa -3'
miRNA:   3'- auuauCuuCCGCCGCUACC-UACgCCG- -5'
32840 3' -53 NC_007346.1 + 343213 0.7 0.974648
Target:  5'- -uAUGGAgcAGGCGGUGG-GGAUGaUGGUu -3'
miRNA:   3'- auUAUCU--UCCGCCGCUaCCUAC-GCCG- -5'
32840 3' -53 NC_007346.1 + 324768 0.68 0.992861
Target:  5'- ----cGguGGUGGUGGUGGuUGUGGUg -3'
miRNA:   3'- auuauCuuCCGCCGCUACCuACGCCG- -5'
32840 3' -53 NC_007346.1 + 314706 0.83 0.427486
Target:  5'- uUGGUGGGGguGGCGGUGGUGGggGCGGUg -3'
miRNA:   3'- -AUUAUCUU--CCGCCGCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 314679 0.71 0.944079
Target:  5'- nUGGUGGAuauugggcAGGgGGUGGUGGuUGUGGUg -3'
miRNA:   3'- -AUUAUCU--------UCCgCCGCUACCuACGCCG- -5'
32840 3' -53 NC_007346.1 + 311771 0.69 0.98331
Target:  5'- ----cGGAGGUuggcuuGGUGGUGGAgaugGCGGUg -3'
miRNA:   3'- auuauCUUCCG------CCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 311727 0.8 0.59573
Target:  5'- gUGGUGGcgguGGUGGCGGUGGAgaagGUGGCa -3'
miRNA:   3'- -AUUAUCuu--CCGCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 311669 0.82 0.471715
Target:  5'- cGGUGGAGauGGUGGCGGUGGAauuggugGCGGCg -3'
miRNA:   3'- aUUAUCUU--CCGCCGCUACCUa------CGCCG- -5'
32840 3' -53 NC_007346.1 + 311636 0.7 0.966279
Target:  5'- -------cGGUaauGGCGAUGGAgaugGCGGCg -3'
miRNA:   3'- auuaucuuCCG---CCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 311603 0.8 0.556549
Target:  5'- cGGUGGAguAGGCGGaGAUGGcgGUGGCg -3'
miRNA:   3'- aUUAUCU--UCCGCCgCUACCuaCGCCG- -5'
32840 3' -53 NC_007346.1 + 311576 0.66 0.997825
Target:  5'- cGGU-GAAGGCaGUGgcGGAgauUGUGGCg -3'
miRNA:   3'- aUUAuCUUCCGcCGCuaCCU---ACGCCG- -5'
32840 3' -53 NC_007346.1 + 311541 0.81 0.508705
Target:  5'- uUGGUGGAGGGguaaUGGCGGUGGAgaugGCGGUg -3'
miRNA:   3'- -AUUAUCUUCC----GCCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 311503 0.75 0.814135
Target:  5'- uUGGUGG-AGGCgguaauGGCGGUGGAgaugGCGGUg -3'
miRNA:   3'- -AUUAUCuUCCG------CCGCUACCUa---CGCCG- -5'
32840 3' -53 NC_007346.1 + 311437 0.75 0.803055
Target:  5'- gUAAUGGu-GGUGGCGAUGGAgguaguggaggagaUgGCGGCg -3'
miRNA:   3'- -AUUAUCuuCCGCCGCUACCU--------------A-CGCCG- -5'
32840 3' -53 NC_007346.1 + 311371 0.75 0.830664
Target:  5'- ---gAGAAGGCGGCGGcgacGGAggugGgGGCa -3'
miRNA:   3'- auuaUCUUCCGCCGCUa---CCUa---CgCCG- -5'
32840 3' -53 NC_007346.1 + 310719 0.71 0.959719
Target:  5'- gGGUGGcgcAGGCGGUG-UGGGUG-GGCu -3'
miRNA:   3'- aUUAUCu--UCCGCCGCuACCUACgCCG- -5'
32840 3' -53 NC_007346.1 + 310687 0.71 0.944079
Target:  5'- ---gAGggGGUgaggauGGUGGUGGAgaugGCGGUg -3'
miRNA:   3'- auuaUCuuCCG------CCGCUACCUa---CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.