miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32840 5' -60.6 NC_007346.1 + 68196 0.66 0.903146
Target:  5'- -uGCAACAaguguacuugUUCCUCCGCCGauuauUCGuCCUGc -3'
miRNA:   3'- uuCGUUGU----------GAGGAGGCGGC-----GGC-GGAC- -5'
32840 5' -60.6 NC_007346.1 + 309828 0.66 0.903146
Target:  5'- --cCAcCGCcgCCaaaUCCGCCGCCGCCa- -3'
miRNA:   3'- uucGUuGUGa-GG---AGGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 43718 0.66 0.897224
Target:  5'- cAGCAGCGCg----CGCCGCUGCUUGu -3'
miRNA:   3'- uUCGUUGUGaggagGCGGCGGCGGAC- -5'
32840 5' -60.6 NC_007346.1 + 310971 0.66 0.897224
Target:  5'- cAAGCu-CACccucgCCUCCGCCGCCaucuCCUc -3'
miRNA:   3'- -UUCGuuGUGa----GGAGGCGGCGGc---GGAc -5'
32840 5' -60.6 NC_007346.1 + 197866 0.66 0.897224
Target:  5'- aGAGCGACACacCCUCCuguaCCGuCCGUCUc -3'
miRNA:   3'- -UUCGUUGUGa-GGAGGc---GGC-GGCGGAc -5'
32840 5' -60.6 NC_007346.1 + 200553 0.66 0.891105
Target:  5'- -cGCAucCACcaaaUCaaCCGCCGCCGCCa- -3'
miRNA:   3'- uuCGUu-GUG----AGgaGGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 189113 0.66 0.871591
Target:  5'- -cGCcGCcauCUCCaCCGCCGCCcucaccGCCUGa -3'
miRNA:   3'- uuCGuUGu--GAGGaGGCGGCGG------CGGAC- -5'
32840 5' -60.6 NC_007346.1 + 309299 0.67 0.857656
Target:  5'- -cGCcGC-CUCCcagcCCGUCGCCGCCa- -3'
miRNA:   3'- uuCGuUGuGAGGa---GGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 309790 0.67 0.854784
Target:  5'- -cGCAAU-CUCCUCCaccgccauuaccaCCGCCGCCUu -3'
miRNA:   3'- uuCGUUGuGAGGAGGc------------GGCGGCGGAc -5'
32840 5' -60.6 NC_007346.1 + 295579 0.67 0.850424
Target:  5'- gGAGCAccGCAgUaCC-CCGCCGCCGUUUc -3'
miRNA:   3'- -UUCGU--UGUgA-GGaGGCGGCGGCGGAc -5'
32840 5' -60.6 NC_007346.1 + 169765 0.67 0.835457
Target:  5'- ---aAGCGC-CCUCCGCCGCCGaaaaaggCUGu -3'
miRNA:   3'- uucgUUGUGaGGAGGCGGCGGCg------GAC- -5'
32840 5' -60.6 NC_007346.1 + 310935 0.67 0.835457
Target:  5'- -uGCcccCAcCUCCgUCGCCGCCGCCUu -3'
miRNA:   3'- uuCGuu-GU-GAGGaGGCGGCGGCGGAc -5'
32840 5' -60.6 NC_007346.1 + 156512 0.67 0.835457
Target:  5'- cAGCAGCAC-CCgCUGCUGCUGCUc- -3'
miRNA:   3'- uUCGUUGUGaGGaGGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 57898 0.68 0.803672
Target:  5'- -uGCAAC-CUCCaccaucUCCGCCaCCGCCg- -3'
miRNA:   3'- uuCGUUGuGAGG------AGGCGGcGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 228017 0.68 0.786956
Target:  5'- -cGCAAcCACUCCcauaCCGgcaCCGCCGCCa- -3'
miRNA:   3'- uuCGUU-GUGAGGa---GGC---GGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 127918 0.68 0.778415
Target:  5'- -cGCcacCACcgccaUCUCCGCCGCCGCCa- -3'
miRNA:   3'- uuCGuu-GUGa----GGAGGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 239649 0.68 0.769762
Target:  5'- -uGCAacACGCUCCUUgGgcgguuCCGCCGCCUu -3'
miRNA:   3'- uuCGU--UGUGAGGAGgC------GGCGGCGGAc -5'
32840 5' -60.6 NC_007346.1 + 307363 0.69 0.761004
Target:  5'- -cGCcACcaACUCCaCCGCCGCCGCUc- -3'
miRNA:   3'- uuCGuUG--UGAGGaGGCGGCGGCGGac -5'
32840 5' -60.6 NC_007346.1 + 241440 0.69 0.755702
Target:  5'- aGAGCAACGCgUCgcgcgcgauacaaaUCUGCCGCCGUCUu -3'
miRNA:   3'- -UUCGUUGUG-AGg-------------AGGCGGCGGCGGAc -5'
32840 5' -60.6 NC_007346.1 + 137642 0.69 0.734173
Target:  5'- gAGGCGu--UUCCcaCCGCCGCCGCCg- -3'
miRNA:   3'- -UUCGUuguGAGGa-GGCGGCGGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.