miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32843 3' -62 NC_007346.1 + 201245 0.66 0.864886
Target:  5'- uGGCGGUUGCAacGGUgguuccggcgaugguGGCGGUGaaaCUGg -3'
miRNA:   3'- -CCGUCGACGU--CCG---------------CCGCCACgugGAC- -5'
32843 3' -62 NC_007346.1 + 198746 0.66 0.862125
Target:  5'- uGGCGGagaUGguGGUGGUGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCg--ACguCCGCCGCCACgUggAC- -5'
32843 3' -62 NC_007346.1 + 56887 0.66 0.860036
Target:  5'- cGCAGCUgaagcuggccagagGCAGGCaaCGGaUGCugCUGg -3'
miRNA:   3'- cCGUCGA--------------CGUCCGccGCC-ACGugGAC- -5'
32843 3' -62 NC_007346.1 + 311732 0.66 0.855103
Target:  5'- uGGCGG-UGguGGCGGUGGUGgCGgUg- -3'
miRNA:   3'- -CCGUCgACguCCGCCGCCAC-GUgGac -5'
32843 3' -62 NC_007346.1 + 324768 0.66 0.855103
Target:  5'- cGGUGGUggUGguGGuuGUGGUGUAUCUGc -3'
miRNA:   3'- -CCGUCG--ACguCCgcCGCCACGUGGAC- -5'
32843 3' -62 NC_007346.1 + 197652 0.66 0.855103
Target:  5'- uGGCGGCgGCGauGGUGGUGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCGaCGU--CCGCCGCCACgUggAC- -5'
32843 3' -62 NC_007346.1 + 208434 0.66 0.847911
Target:  5'- gGGCGG-UGUuucgucacgaaAGGCGGCGG-GUGCCa- -3'
miRNA:   3'- -CCGUCgACG-----------UCCGCCGCCaCGUGGac -5'
32843 3' -62 NC_007346.1 + 188891 0.66 0.847911
Target:  5'- uGGCGGCgaUGguGGUGGUGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 349841 0.66 0.840557
Target:  5'- uGGUGGUgaacuuGGUGGCGGUGgACUUGg -3'
miRNA:   3'- -CCGUCGacgu--CCGCCGCCACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 200568 0.66 0.840557
Target:  5'- uGGCGGUgaUGguGGCGGCGGagaugGCGg--- -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCa----CGUggac -5'
32843 3' -62 NC_007346.1 + 311657 0.66 0.840557
Target:  5'- uGGCGGUggaauUGguGGCGGCGGUaaugGCGa-UGg -3'
miRNA:   3'- -CCGUCG-----ACguCCGCCGCCA----CGUggAC- -5'
32843 3' -62 NC_007346.1 + 154259 0.66 0.833045
Target:  5'- gGGCAGguaCUGCcGGCGGUGcUGgACUUGg -3'
miRNA:   3'- -CCGUC---GACGuCCGCCGCcACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 311570 0.66 0.833045
Target:  5'- aGGCAGUgGCGGagauuGUGGCGGUGgAgUUGg -3'
miRNA:   3'- -CCGUCGaCGUC-----CGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 309760 0.66 0.833045
Target:  5'- uGGUGGUgGagauGGUGGCGGUGgACUUGg -3'
miRNA:   3'- -CCGUCGaCgu--CCGCCGCCACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 307195 0.66 0.833045
Target:  5'- uGGUGGUgGagauGGUGGCGGUGgACUUGg -3'
miRNA:   3'- -CCGUCGaCgu--CCGCCGCCACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 306320 0.66 0.833045
Target:  5'- gGGCGGUggagGCGgagauGGCGGCGGUGgAaUUGg -3'
miRNA:   3'- -CCGUCGa---CGU-----CCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 272449 0.66 0.825381
Target:  5'- uGGCGG-UGguGGCGGUGGUaCACg-- -3'
miRNA:   3'- -CCGUCgACguCCGCCGCCAcGUGgac -5'
32843 3' -62 NC_007346.1 + 59729 0.66 0.825381
Target:  5'- cGGCGGCgguggugaUGguGGCGGUGGUGa---UGg -3'
miRNA:   3'- -CCGUCG--------ACguCCGCCGCCACguggAC- -5'
32843 3' -62 NC_007346.1 + 261882 0.67 0.81757
Target:  5'- cGGCAGCgguguugaGUAGaGCGGUGuauUGCGCUUGa -3'
miRNA:   3'- -CCGUCGa-------CGUC-CGCCGCc--ACGUGGAC- -5'
32843 3' -62 NC_007346.1 + 73428 0.67 0.801534
Target:  5'- aGGCAGUccagGCAGGagaGGUuguuGGUGCAgUUGg -3'
miRNA:   3'- -CCGUCGa---CGUCCg--CCG----CCACGUgGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.