miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32843 3' -62 NC_007346.1 + 188043 0.71 0.575613
Target:  5'- uGGCGGC-GUGGGCGGCGGUGgGg--- -3'
miRNA:   3'- -CCGUCGaCGUCCGCCGCCACgUggac -5'
32843 3' -62 NC_007346.1 + 307477 0.71 0.584866
Target:  5'- uGGCGGUggaGUAGGCGGUGGUGgAgCa- -3'
miRNA:   3'- -CCGUCGa--CGUCCGCCGCCACgUgGac -5'
32843 3' -62 NC_007346.1 + 128188 0.7 0.603451
Target:  5'- cGGCGGUgGCGgugauGGUGGUGGUGgACUUGg -3'
miRNA:   3'- -CCGUCGaCGU-----CCGCCGCCACgUGGAC- -5'
32843 3' -62 NC_007346.1 + 60376 0.7 0.621174
Target:  5'- uGGCGGUgggGUGGGUGGUGGUGgagacgguucggaUGCCUGa -3'
miRNA:   3'- -CCGUCGa--CGUCCGCCGCCAC-------------GUGGAC- -5'
32843 3' -62 NC_007346.1 + 128554 0.7 0.64079
Target:  5'- uGGCGGUgauggcgaUGCAgauGGCGGCGGUGgAgUUGg -3'
miRNA:   3'- -CCGUCG--------ACGU---CCGCCGCCACgUgGAC- -5'
32843 3' -62 NC_007346.1 + 89948 0.7 0.644525
Target:  5'- cGGUAGCUGCauuuuucuuuggcugAGGCGGUGGaUGaugAUCUGg -3'
miRNA:   3'- -CCGUCGACG---------------UCCGCCGCC-ACg--UGGAC- -5'
32843 3' -62 NC_007346.1 + 50031 0.7 0.650125
Target:  5'- uGGCGacGCUGguGGCGGUGG-GUACg-- -3'
miRNA:   3'- -CCGU--CGACguCCGCCGCCaCGUGgac -5'
32843 3' -62 NC_007346.1 + 138075 0.7 0.650125
Target:  5'- gGGCGGCgGC-GGCGGUGGgaaaCGCCUc -3'
miRNA:   3'- -CCGUCGaCGuCCGCCGCCac--GUGGAc -5'
32843 3' -62 NC_007346.1 + 308741 0.7 0.656653
Target:  5'- uGGUGGCgGCAauggugguggagauGGCGGUGGggGCACCg- -3'
miRNA:   3'- -CCGUCGaCGU--------------CCGCCGCCa-CGUGGac -5'
32843 3' -62 NC_007346.1 + 309985 0.7 0.656653
Target:  5'- uGGUGGCgGCAauggugguggagauGGCGGUGGggGCACCg- -3'
miRNA:   3'- -CCGUCGaCGU--------------CCGCCGCCa-CGUGGac -5'
32843 3' -62 NC_007346.1 + 307941 0.7 0.656653
Target:  5'- uGGUGGCgGCAauggugguggagauGGCGGUGGggGCACCg- -3'
miRNA:   3'- -CCGUCGaCGU--------------CCGCCGCCa-CGUGGac -5'
32843 3' -62 NC_007346.1 + 198848 0.7 0.659448
Target:  5'- uGGCGGCgGCGauGGCGGCGGgGUGgUUGg -3'
miRNA:   3'- -CCGUCGaCGU--CCGCCGCCaCGUgGAC- -5'
32843 3' -62 NC_007346.1 + 177837 0.69 0.678034
Target:  5'- uGCGGgUGCGGGC-GCaGGUGCGgCUGu -3'
miRNA:   3'- cCGUCgACGUCCGcCG-CCACGUgGAC- -5'
32843 3' -62 NC_007346.1 + 181866 0.69 0.678034
Target:  5'- uGGCGGUggUGguGGUGGCGGUGgCAa-UGg -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCAC-GUggAC- -5'
32843 3' -62 NC_007346.1 + 169189 0.69 0.678034
Target:  5'- cGGCGGCUGUAGuCGGUGGgGUauugGCUUGg -3'
miRNA:   3'- -CCGUCGACGUCcGCCGCCaCG----UGGAC- -5'
32843 3' -62 NC_007346.1 + 307165 0.69 0.696495
Target:  5'- cGGCGGCgacggGCugggGGGCGGCGGgcucgGCGgCg- -3'
miRNA:   3'- -CCGUCGa----CG----UCCGCCGCCa----CGUgGac -5'
32843 3' -62 NC_007346.1 + 181839 0.69 0.705661
Target:  5'- nGGCGGCggUGguGGUGGCGGUgGCGg--- -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCA-CGUggac -5'
32843 3' -62 NC_007346.1 + 189551 0.69 0.705661
Target:  5'- aGGCGGUga-GGGCGGCGGUGgAgaUGg -3'
miRNA:   3'- -CCGUCGacgUCCGCCGCCACgUggAC- -5'
32843 3' -62 NC_007346.1 + 59288 0.69 0.705661
Target:  5'- uGGCGGCggUGguGGCGGUGGUaaagGCGgCg- -3'
miRNA:   3'- -CCGUCG--ACguCCGCCGCCA----CGUgGac -5'
32843 3' -62 NC_007346.1 + 309730 0.68 0.72383
Target:  5'- uGGCGGCgacggGCugggAGGCGGCGGgcucgGCGgCg- -3'
miRNA:   3'- -CCGUCGa----CG----UCCGCCGCCa----CGUgGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.