miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32854 3' -48.9 NC_007383.1 + 36788 0.74 0.864481
Target:  5'- aCggUGGCGACAGCagugucGGCGGCAGUcGAUAu -3'
miRNA:   3'- -GuuGCUGCUGUCG------CUGCUGUUA-CUAU- -5'
32854 3' -48.9 NC_007383.1 + 36955 0.82 0.458902
Target:  5'- aGACGAUgaaGGCGGCGGCGACAGUGGc- -3'
miRNA:   3'- gUUGCUG---CUGUCGCUGCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 37004 0.66 0.998503
Target:  5'- --cCGGCGACAGCaauaucGACGGCAAc---- -3'
miRNA:   3'- guuGCUGCUGUCG------CUGCUGUUacuau -5'
32854 3' -48.9 NC_007383.1 + 38693 0.73 0.901361
Target:  5'- uGACGACGACGaCGAauauacCGACGAUGAUu -3'
miRNA:   3'- gUUGCUGCUGUcGCU------GCUGUUACUAu -5'
32854 3' -48.9 NC_007383.1 + 39939 0.72 0.92039
Target:  5'- aCGAaGACGAgGGCGACGACAAg---- -3'
miRNA:   3'- -GUUgCUGCUgUCGCUGCUGUUacuau -5'
32854 3' -48.9 NC_007383.1 + 40303 0.75 0.793715
Target:  5'- aAACu-CGACGGCGGCGACGAaGAUAu -3'
miRNA:   3'- gUUGcuGCUGUCGCUGCUGUUaCUAU- -5'
32854 3' -48.9 NC_007383.1 + 45415 0.91 0.158641
Target:  5'- aCGACGACGACGaCGACGGCAGUGAUGa -3'
miRNA:   3'- -GUUGCUGCUGUcGCUGCUGUUACUAU- -5'
32854 3' -48.9 NC_007383.1 + 51853 0.76 0.784029
Target:  5'- uGACGACGACAaCGACGACugcGAUGu -3'
miRNA:   3'- gUUGCUGCUGUcGCUGCUGuuaCUAU- -5'
32854 3' -48.9 NC_007383.1 + 52478 0.66 0.997403
Target:  5'- aAACGACGGCGGUGcgaguCGAgAauucAUGAUAu -3'
miRNA:   3'- gUUGCUGCUGUCGCu----GCUgU----UACUAU- -5'
32854 3' -48.9 NC_007383.1 + 55875 0.73 0.879981
Target:  5'- gCGGCGGCGACGGCuuaACGACAGUcucaagacGAUAa -3'
miRNA:   3'- -GUUGCUGCUGUCGc--UGCUGUUA--------CUAU- -5'
32854 3' -48.9 NC_007383.1 + 56561 0.7 0.963121
Target:  5'- gAGCGGCuGugAGuCGACGACcGUGAUu -3'
miRNA:   3'- gUUGCUG-CugUC-GCUGCUGuUACUAu -5'
32854 3' -48.9 NC_007383.1 + 61601 0.7 0.969823
Target:  5'- uGACGACaauuGACAGCGAacACGAUGAg- -3'
miRNA:   3'- gUUGCUG----CUGUCGCUgcUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 63095 0.69 0.978173
Target:  5'- aGACGACGACAacgaaGACGAgggaaaCGAUGAUGa -3'
miRNA:   3'- gUUGCUGCUGUcg---CUGCU------GUUACUAU- -5'
32854 3' -48.9 NC_007383.1 + 63126 0.72 0.926199
Target:  5'- gCGAUGACGAUAaCGACGGaGAUGAUGa -3'
miRNA:   3'- -GUUGCUGCUGUcGCUGCUgUUACUAU- -5'
32854 3' -48.9 NC_007383.1 + 64426 1.08 0.014818
Target:  5'- cCAACGACGACAGCGACGACAAUGAUAa -3'
miRNA:   3'- -GUUGCUGCUGUCGCUGCUGUUACUAU- -5'
32854 3' -48.9 NC_007383.1 + 66322 0.72 0.931739
Target:  5'- aAACGACGACGaaGACGACGAgGAc- -3'
miRNA:   3'- gUUGCUGCUGUcgCUGCUGUUaCUau -5'
32854 3' -48.9 NC_007383.1 + 80889 0.74 0.872352
Target:  5'- cCAGCaGGCGucgcucUAGCGGCGGCGGUGGUGg -3'
miRNA:   3'- -GUUG-CUGCu-----GUCGCUGCUGUUACUAU- -5'
32854 3' -48.9 NC_007383.1 + 82034 0.68 0.989592
Target:  5'- gAGCGACGACcGCaccGACGACGGcGAc- -3'
miRNA:   3'- gUUGCUGCUGuCG---CUGCUGUUaCUau -5'
32854 3' -48.9 NC_007383.1 + 84456 0.7 0.959408
Target:  5'- aGACGuCGuCGGCGACGcCGAUGGa- -3'
miRNA:   3'- gUUGCuGCuGUCGCUGCuGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 86681 0.66 0.998191
Target:  5'- gAACGAuUGGCGGCGACaGCAAUa--- -3'
miRNA:   3'- gUUGCU-GCUGUCGCUGcUGUUAcuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.