miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32854 3' -48.9 NC_007383.1 + 1298 0.75 0.830718
Target:  5'- uGGCGGCGGUGGUGGCGGCGGUGGc- -3'
miRNA:   3'- gUUGCUGCUGUCGCUGCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 3754 0.66 0.997827
Target:  5'- uCAGCGACGGgcuCAGCGACGGg------- -3'
miRNA:   3'- -GUUGCUGCU---GUCGCUGCUguuacuau -5'
32854 3' -48.9 NC_007383.1 + 3826 0.66 0.998322
Target:  5'- uCAGCGACGGguucagcgucgggcuCAGCGAUGgguucaACGAUGGg- -3'
miRNA:   3'- -GUUGCUGCU---------------GUCGCUGC------UGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 5511 0.72 0.922746
Target:  5'- uGACGACGACauaagugauaaaaguGGUGACGACGAUa--- -3'
miRNA:   3'- gUUGCUGCUG---------------UCGCUGCUGUUAcuau -5'
32854 3' -48.9 NC_007383.1 + 5587 0.7 0.966591
Target:  5'- aUAAUagUGACAGUgacGACGACAAUGAUAa -3'
miRNA:   3'- -GUUGcuGCUGUCG---CUGCUGUUACUAU- -5'
32854 3' -48.9 NC_007383.1 + 5699 0.67 0.994124
Target:  5'- gGACGAUGACuccucgAGCGAUGAUAAcggGAUu -3'
miRNA:   3'- gUUGCUGCUG------UCGCUGCUGUUa--CUAu -5'
32854 3' -48.9 NC_007383.1 + 6454 0.69 0.984679
Target:  5'- --cCGAUGAUAGCaGCGAUGAUGAc- -3'
miRNA:   3'- guuGCUGCUGUCGcUGCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 11449 0.73 0.887362
Target:  5'- aCAACGAUGACGaUGACGACAAaGAa- -3'
miRNA:   3'- -GUUGCUGCUGUcGCUGCUGUUaCUau -5'
32854 3' -48.9 NC_007383.1 + 14959 0.68 0.988115
Target:  5'- aAGCGcUGACAcUGACGGCGAUGAa- -3'
miRNA:   3'- gUUGCuGCUGUcGCUGCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 15578 0.87 0.241892
Target:  5'- aCAGCGACaACAGCGAUGACGAUGAa- -3'
miRNA:   3'- -GUUGCUGcUGUCGCUGCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 16750 0.69 0.978173
Target:  5'- uCGACGAaacCGAUAGCGACGuCAAUa--- -3'
miRNA:   3'- -GUUGCU---GCUGUCGCUGCuGUUAcuau -5'
32854 3' -48.9 NC_007383.1 + 19050 0.74 0.839485
Target:  5'- gCAACGACGACGGUauuaucuuCGACAAUGGc- -3'
miRNA:   3'- -GUUGCUGCUGUCGcu------GCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 22398 0.67 0.994124
Target:  5'- uCGACGGCGgucagagcuccgGCGGUGACGACAu----- -3'
miRNA:   3'- -GUUGCUGC------------UGUCGCUGCUGUuacuau -5'
32854 3' -48.9 NC_007383.1 + 23725 0.82 0.439523
Target:  5'- uCGGCGGCGGaGGUGGCGGCGAUGAUGu -3'
miRNA:   3'- -GUUGCUGCUgUCGCUGCUGUUACUAU- -5'
32854 3' -48.9 NC_007383.1 + 24011 0.7 0.971949
Target:  5'- -cACGACGACGGCGACaugaaucaaaacgaGACGuuucGUGAc- -3'
miRNA:   3'- guUGCUGCUGUCGCUG--------------CUGU----UACUau -5'
32854 3' -48.9 NC_007383.1 + 27066 0.72 0.92039
Target:  5'- gCAACGAaaaugguaaaaaUGGCAGCGAaGACGAUGAc- -3'
miRNA:   3'- -GUUGCU------------GCUGUCGCUgCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 30281 0.67 0.993178
Target:  5'- aGACGACGACGcCGGCGAUAu----- -3'
miRNA:   3'- gUUGCUGCUGUcGCUGCUGUuacuau -5'
32854 3' -48.9 NC_007383.1 + 32466 0.72 0.926199
Target:  5'- aCGAUGGCGACGcCGACGACAAg---- -3'
miRNA:   3'- -GUUGCUGCUGUcGCUGCUGUUacuau -5'
32854 3' -48.9 NC_007383.1 + 32593 0.69 0.984679
Target:  5'- aAGCGGCaGCAGaUGAUGAUAGUGAa- -3'
miRNA:   3'- gUUGCUGcUGUC-GCUGCUGUUACUau -5'
32854 3' -48.9 NC_007383.1 + 35399 0.69 0.980534
Target:  5'- aCAGCGGUGGCAGCGAuuCGAguAUGGa- -3'
miRNA:   3'- -GUUGCUGCUGUCGCU--GCUguUACUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.